Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0529 ATGAAAATCATAATGGATGAGCAGAATATGATAAGGGCTGTTGCTTCTTCCTCTAACTCTTCTTCTATGGTATCTTCTAAAAAATATGATGTTTTTCTAAGCTTTCGAGGCGAGGACACTCGTAAGAACTTCACAAGCCATCTTTATGAAGCTTTGAAGCAAAAGAAGATTGAAACCTATATAGACTACCGCCTTGAAAAGGGAGATGAAATCTCGGCAGCGCTCATCAAAGCCATCGAAGATTCTCATGTATCTGTTGTCATCTTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTGGGCAAGATTATGGAATGCAAGAAAGAAAGAGGACAGATTGTGATACCAGTATTCTATAATATTGATCCATCCCATGTGAGGAAGCAAACTGGGAGCTACGAGCAATCCTTTGCGAAACATACGGGAGAACCCAGGTGCAGCAAATGGAAAGCTGCTCTCACTGAAGCAGCCAATTTAGCTGCATGGGACTCTCAAATTTACAGGACTGAATCTGAATTCCTTAAGGATATTGTTAAAGATGTTTTGCGAAAATTGGCTCCTAGATACCCAAACCACCGGAAAGAACTGGTAGGAGTTGAGGAAAACTATGAAAAGATCGAGTCATTACTAAAAATTGGGTCAAGCAAAGTTAGAATTCTGGGAATATGGGGCATGGGTGGAATAGGTAAGACCACCCTCGCTAGTGCTTTATATGACAAATTGTCTCCTGAATTTGAAGGTTGTTGCTTCCTCGCAAATGTAAGGGAAGAATCAGACAAGCATGGATTTAAAGCTTTACGTAATAAACTTTTTTCTGAGTTGTTAGAGAATGAAAATCTTTGTTTTGATGCATCATCCTTTTTAGTGTCCCATTTTGTTTTGAGTAGGCTTGGACGCAAAAAAGTTTTCATAGTCTTGGATGATGTGGATACCTCAGAGCAACTAGAAAATCTAATTGAAGATTTTGATTTCTTGGGACTTGGAAGTAGAGTCATTGTTACAACAAGAAATAAGCAAATATTTAGCCAAGTTGATAAAATATATAAGGTCAAGGAATTGAGCATTCATCACTCTCTTAAGCTTTTCTGCTTATCTGTATTTCGAGAAAAACAACCTAAACATGGATATGAAGATCTATCAAGAAGTGCAATTTCCTATTGCAAAGGTATTCCTTTGGCTTTAAAAGTTCTTGGTGCAAGTCTTCGTTCAAGAAGTAAACAAGCATGGGAGTGTGAATTGAGAAAACTCCAAAAGTTTCCAAATATGGAAATTCATAATGTATTAAAATTAAGTTATGATGGCTTAGATTATTCTCAAAAGGAGATATTTCTAGACATTGCATGCTTCTTAAGAGGAAAACAAAGAGACCATGTAACAAGCATATTGGAAGCTTTTGATTTTCCTGCAGCATCAGGGATAGAAGTTCTTTTGGATAAAGCTCTCATAACAATTTCAGGTGGCATTCAAATAGAAATGCATGACTTGATACAGGAAATGGGTTGGAAAATTGTTCATCAGGAACATATCAAAGATCCTGGAAGACGAAGTCGGTTATGGAAACATGAGGAAGTGCATGATGTCTTGAAATATAATAAGGGAACTGAAGTTGTTGAAGGCGTAATTTTAGATTTGTCTAAATTAACCGAGGATCTATACTTGAGCTTTGATTTCCTTGCAAAGATGACTAACGTGAGGTTTCTTAAAATCCATAGTTGGTCCAAGTTTACCATATTTAATGTATACCTTCCTAATGGTCTTGACTCATTGTCTTATAAACTGAGGTACCTTCACTGGGATGGATTCTGTCTTGAGTCTTTGCCATCTAGGTTTTGTGCTGAACAGCTTGTAGAACTTTGCATGCATTGTAGCAAGCTTAAAAAGCTTTGGGATGGGGTTCAGAATCTTGTGAATTTGAAGACAATTGACCTTTGGGGATCCCGAGACCTGGTTGAGATCCCTGACTTATCCAAGGCAGAAAAACTTGAAAGTGTTTCTCTTTGTTATTGTGAAAGCCTATGCCAGCTCCAAGTTCATTCAAAATCTCTTGGTGTACTTAACCTCTATGGTTGTTCATCACTTAGGGAATTCTTAGTGACATCAGAGGAATTGACAGAACTGAACTTGGCTTTTACTGCTATATGTGCATTGCCATCATCAATTTGGCAAAAAAGAAAACTCAGATCTCTTTACCTAAGAGGTTGTCACAATCTCAACAAGTTATCAGATGAACCCAGATTTTGTGGTTCTTACAAGCACTCCATCACAACATTGGCCTCTAATGTTAAGAGATTGCCTGTGAACATTGAAAATCTTTCGATGATGACAATGATTTGGTTAGATGATTGCAGGAAACTCGTGTCTTTGCCGGAGCTTCCGCTGTTCCTTGAAAAGTTAAGTGCCTGTAACTGCACTTCTTTGGACACAAAGATCACTCAGCAGCAAGTGTTACAACACATGTTACAAAGTCGCATACCCTACTTACGCAAACACTATCTTAAGTGTTATGATGAAGAATATTTCTTCCCGGGGGATCATGTGATTGATGAGTGTAGGTTTCACACGACACAGAATTCAATAACCATTCCTTATCTTCAGAAACCTGAATTGTGTGGTTTCATTTATTGCATCATTCTCTCTATGGGACCACTCTTAGAGTGTGATGTTTCCTGCTCTGTCTATCAAGATGGCATAAGGGTTGGCTGGCTCGAAAGGTTGTTGGAATACGAAAATTTGATTTCAGATCACGTGGTGATTTTGTATCATGACATCAGTGAATTTGACAAAATAAGTGAAGTGCATGATCATTTCTTCAGCAACATAACATTTATATTTGAAAACAATGAAGACCGCATAACAGAGTTTGGTGTCTTCCCGGTATATGCCTCAGAATCAGGGTTGAAGTTGGTTGGTAGCAAGGAAATTTTTGAATGA 2940 0.3806 MKIIMDEQNMIRAVASSSNSSSMVSSKKYDVFLSFRGEDTRKNFTSHLYEALKQKKIETYIDYRLEKGDEISAALIKAIEDSHVSVVIFSENYASSKWCLGELGKIMECKKERGQIVIPVFYNIDPSHVRKQTGSYEQSFAKHTGEPRCSKWKAALTEAANLAAWDSQIYRTESEFLKDIVKDVLRKLAPRYPNHRKELVGVEENYEKIESLLKIGSSKVRILGIWGMGGIGKTTLASALYDKLSPEFEGCCFLANVREESDKHGFKALRNKLFSELLENENLCFDASSFLVSHFVLSRLGRKKVFIVLDDVDTSEQLENLIEDFDFLGLGSRVIVTTRNKQIFSQVDKIYKVKELSIHHSLKLFCLSVFREKQPKHGYEDLSRSAISYCKGIPLALKVLGASLRSRSKQAWECELRKLQKFPNMEIHNVLKLSYDGLDYSQKEIFLDIACFLRGKQRDHVTSILEAFDFPAASGIEVLLDKALITISGGIQIEMHDLIQEMGWKIVHQEHIKDPGRRSRLWKHEEVHDVLKYNKGTEVVEGVILDLSKLTEDLYLSFDFLAKMTNVRFLKIHSWSKFTIFNVYLPNGLDSLSYKLRYLHWDGFCLESLPSRFCAEQLVELCMHCSKLKKLWDGVQNLVNLKTIDLWGSRDLVEIPDLSKAEKLESVSLCYCESLCQLQVHSKSLGVLNLYGCSSLREFLVTSEELTELNLAFTAICALPSSIWQKRKLRSLYLRGCHNLNKLSDEPRFCGSYKHSITTLASNVKRLPVNIENLSMMTMIWLDDCRKLVSLPELPLFLEKLSACNCTSLDTKITQQQVLQHMLQSRIPYLRKHYLKCYDEEYFFPGDHVIDECRFHTTQNSITIPYLQKPELCGFIYCIILSMGPLLECDVSCSVYQDGIRVGWLERLLEYENLISDHVVILYHDISEFDKISEVHDHFFSNITFIFENNEDRITEFGVFPVYASESGLKLVGSKEIFE* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0529 979 Pfam Leucine Rich Repeat 617 636 IPR011713 -
Gso13g0529 979 Gene3D Ribonuclease Inhibitor 494 840 IPR032675 -
Gso13g0529 979 Gene3D - 25 184 IPR035897 -
Gso13g0529 979 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 163 IPR035897 -
Gso13g0529 979 SMART till_3 28 162 IPR000157 GO:0007165
Gso13g0529 979 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 21 953 - -
Gso13g0529 979 ProSiteProfiles TIR domain profile. 27 188 IPR000157 GO:0007165
Gso13g0529 979 Pfam NB-ARC domain 207 425 IPR002182 GO:0043531
Gso13g0529 979 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 953 IPR044974 GO:0006952
Gso13g0529 979 Gene3D - 185 354 IPR027417 -
Gso13g0529 979 SUPERFAMILY L domain-like 510 823 - -
Gso13g0529 979 PRINTS Disease resistance protein signature 222 237 - -
Gso13g0529 979 PRINTS Disease resistance protein signature 299 313 - -
Gso13g0529 979 PRINTS Disease resistance protein signature 390 404 - -
Gso13g0529 979 PRINTS Disease resistance protein signature 636 652 - -
Gso13g0529 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 449 IPR027417 -
Gso13g0529 979 Pfam TIR domain 28 199 IPR000157 GO:0007165
Gso13g0529 979 Gene3D - 355 439 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0529 Gso-Chr13 17941142 17946617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0529 25 787 WRKY Transcription Factor Family AT4G12020 31.432 5.86e-98 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0529 - - gmx:100793798 1962.19