Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0525 ATGTCGGGTCGAGGAGGAGGAAGGGACCGGTTTAGGAGGGATTATCCTTCTAGGTGTGATGATAATAGGGGGAATGGGGTTGGTGGACGTGACAACCGCAACAGCAGCCGCAACAACCCTCCTTCCAGGCATCTTTGGGTTGGGAATCTATCCCACAATATTGTAGAGGAAGAACTTGCTCACCATTTCTTGAGGTACGGACCACTGGAGAATGTGGCATTCCAACCCGGCCGCAGCTATGCTTTCATAAATTTCAGAATGGATGAGGATGCTATTGATGCCTTGAGAGCACTGCAAGGCTTTCCTCTTGCTGGCAACCCACTTAGAATCGAGTTTGCAAAGGCGGATAAACCATCGGCAATGCAACATGATGAAGATTACTCATGGGATGAACGAAACTCGATATTAAGGGGTTCTCCTTTCTCGCAAAGAGAGTTTAGAGGATACCATGGTAGCCCTGAACCGCATTATTCTGATAAATCCAAGCTAGGTGATAAAAATCCAGAACCCAGTGAGGTTCTTTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGAGGAATCAATTTTAAGAAAGGCTTTTTCTCCATTTGGTGAGATAGTGAAGATTACTACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTAGGAGCCTAACGTCTGCGTGCAGTGCAAGAGATGATCTAAAGGGGAAGTTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAACAGTGAGAGAAGATCATTTAATGGCCCTCGTTCCCCTATTTACAAGTCAAGAGGGCATGATGGATCTTCTGAGAACCTCAGACAGGATCGGAGCTTCAATGCAGATCACAACATTGGTTCTCCAAACCATTTCCGTAATTGGGATTCTGATCCTTATGATCATAACAAAAGTGGTTCTTCATGGGATAGTGGAACTGACACATATGAGCCAAGGAAAGTTGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATCTATGAACATATGAATAGTCCATCAAGAGAAAGACATCATGTGGGTGATTTTCCACTGCGATTTCCTCAAAAGGGTGAATTCACTGAAGATCCACGGGCCTTGCCCGATCTTCCCTATCTACATGAGGCTAAAAGGCTGAAGACTGGTTCTCCTCCTCTTGAAAGAGAGCTTCCAGAGTATCCTTTCACTGAGTTAGAAAGACACAGACGTGTTTTCCCGAGATTATTATCTGATTTACCCCCGCACAAGCCATTTGATAAAGGCTTTGATACTGGAAATTTTGCTTATGGCCAGACTCTTGATCAGCCACCAAATTCACCTCTGCCTCGTTTAGATAGACATGAAGGCCGGAAACCTTATGATAGTTTCCAAATGGGTCCTGGTGCTCTGCAGTCAACATATGTTGAGAAGAAAAGATTCACGCCTGAATCCGATAGTTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGCGGAACCCCTGTTTGTTGTGCACGCTGCTTCCCTGTTGGGAAAGTCCTAGATATGATGTTACCTGAGTTCTTGGATTGCACTGCAAAAACTGGTCTAGATATGCTTTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGCTGACATGGAATGCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGCGCTGCAGTTGCCAAGTTGGATGACAAGACCACCTTATTTCTTGTTCCTCCATCAGAGTTCTCAGAGAAAGTACTGAAGGTACCTGGTAGGTTGAGCATATCTGGTGTTATTCTGAGGTTGGAGAATCCTGATTTAAATCATGGTCCTGAACACATTCAAAGAGAAATGACTAACAAAAATCTGCTGTCCTATAATGAGAATATACTGCATCTGAAGTCTACATTTCCTTCAGTACGTGTACCTACATTCCCATCTATTCCAGAAATGGGTAATTCTGGAATCAGCAATCTTTCATTTCTGGGAAATAAATTTGCAGCAGCTCCATCAGTTTCTGATTCAGCTCGTGCTGTGGCTAGCATGTCCGAGTTTCATGATGAAAGAAGTCACAACTATCCTACCCAGCAGCGGACTTCTTCTCAAAATCTCCAGAACTTCTCTAATAAAGCTCTACCATTGCAGCCATCAAGTGGTGCTGGAGAACCTATTGCTGATGAACACCAACCTATCATTCCAAGGGCAGCGCAGGATGTAAACGCGATTCAACATCCCAGTGGAATTTCTGGTATTCCATTTTATGGTGATAGCAAGTTGTCTTATCCAGATATAAGACATTTAGATCCTTTATCAGTGCCTGTGGGAGCCCTTGCTCCAGAACAGCTTGCACAACTAGCAGCAACGCTTCTTGAGCAGCAGAGGCAATCGGGAGGCTCTTCGAGTACATCTGCGTTGGCTGATCCCCAGCAGATTAACAGGTTTGGCACATCCGACACCTCATCCAGATTTATCTCATCCGACAACTCATCCAGACCACCCCAGAAATATGCTACAGAAAACAATGTGGTGAATTCTGATCTCTCAGCATCTCAGATGGGTCAAAGTCAAATGCTACAGATGCAAAAGCAACAACAGATCGTAAATGTGCCTCAGTTGTCACAGATAGTTCAAAGGGAACCACAAAGTGAGGCTAATGGAAACCAGTTGGATAGCAGCTTGCAGGAAGATGCTGATGTAGATCCACAGAGACGTCTACAAGCAACACTGCAGCTGGCGGCTGTTCTTCTTCACCAAATCCAGCACGGAAAAGGAAGTTGA 2805 0.4446 MSGRGGGRDRFRRDYPSRCDDNRGNGVGGRDNRNSSRNNPPSRHLWVGNLSHNIVEEELAHHFLRYGPLENVAFQPGRSYAFINFRMDEDAIDALRALQGFPLAGNPLRIEFAKADKPSAMQHDEDYSWDERNSILRGSPFSQREFRGYHGSPEPHYSDKSKLGDKNPEPSEVLWIGFPAQLKVEESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLTSACSARDDLKGKLFGNPRVHICFAKSETGSSNSERRSFNGPRSPIYKSRGHDGSSENLRQDRSFNADHNIGSPNHFRNWDSDPYDHNKSGSSWDSGTDTYEPRKVGEKGRTLGVSQEIYEHMNSPSRERHHVGDFPLRFPQKGEFTEDPRALPDLPYLHEAKRLKTGSPPLERELPEYPFTELERHRRVFPRLLSDLPPHKPFDKGFDTGNFAYGQTLDQPPNSPLPRLDRHEGRKPYDSFQMGPGALQSTYVEKKRFTPESDSSSLTEWKWEGTIAKGGTPVCCARCFPVGKVLDMMLPEFLDCTAKTGLDMLSKHYYQAVGVWVVFFVPGSDADMECYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSEFSEKVLKVPGRLSISGVILRLENPDLNHGPEHIQREMTNKNLLSYNENILHLKSTFPSVRVPTFPSIPEMGNSGISNLSFLGNKFAAAPSVSDSARAVASMSEFHDERSHNYPTQQRTSSQNLQNFSNKALPLQPSSGAGEPIADEHQPIIPRAAQDVNAIQHPSGISGIPFYGDSKLSYPDIRHLDPLSVPVGALAPEQLAQLAATLLEQQRQSGGSSSTSALADPQQINRFGTSDTSSRFISSDNSSRPPQKYATENNVVNSDLSASQMGQSQMLQMQKQQQIVNVPQLSQIVQREPQSEANGNQLDSSLQEDADVDPQRRLQATLQLAAVLLHQIQHGKGS* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0525 934 MobiDBLite consensus disorder prediction 28 44 - -
Gso13g0525 934 MobiDBLite consensus disorder prediction 802 849 - -
Gso13g0525 934 Pfam SPOC domain 484 598 IPR012921 -
Gso13g0525 934 SMART rrm1_1 44 111 IPR000504 GO:0003723
Gso13g0525 934 SMART rrm1_1 173 241 IPR000504 GO:0003723
Gso13g0525 934 MobiDBLite consensus disorder prediction 149 166 - -
Gso13g0525 934 Gene3D - 28 122 IPR012677 -
Gso13g0525 934 MobiDBLite consensus disorder prediction 248 324 - -
Gso13g0525 934 CDD RRM3_Spen 45 114 - -
Gso13g0525 934 SUPERFAMILY RNA-binding domain, RBD 183 273 IPR035979 GO:0003676
Gso13g0525 934 MobiDBLite consensus disorder prediction 886 904 - -
Gso13g0525 934 PANTHER RNA-BINDING PROTEIN SPENITO 31 923 - -
Gso13g0525 934 MobiDBLite consensus disorder prediction 147 166 - -
Gso13g0525 934 Gene3D - 158 256 IPR012677 -
Gso13g0525 934 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 245 IPR000504 GO:0003723
Gso13g0525 934 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 108 IPR000504 GO:0003723
Gso13g0525 934 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 237 IPR000504 GO:0003723
Gso13g0525 934 MobiDBLite consensus disorder prediction 1 27 - -
Gso13g0525 934 MobiDBLite consensus disorder prediction 886 905 - -
Gso13g0525 934 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 115 IPR000504 GO:0003723
Gso13g0525 934 PANTHER RNA RECOGNITION MOTIF-CONTAINING 31 923 - -
Gso13g0525 934 MobiDBLite consensus disorder prediction 1 44 - -
Gso13g0525 934 SUPERFAMILY RNA-binding domain, RBD 30 124 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0525 Gso-Chr13 17763520 17777110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0525 30 263 Eukaryotic Initiation Factors Gene Family AT1G22760 24.390 3.85e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0525 - - gmx:100816831 1779.22