Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0516 ATGGGAAACGCTTGTGCAAAAGGAAAACCAGTTGCTCATGTTTCTTCCTCCAATTTCTCTGGAAGTAAGAAGCCTGCAAGTAAGCCAAAGCAGTATTCAAATTCTTCTGAACAACGATCTGCTCCAACAACTTCAGAATTAAATGTTCCCAAATCCATCTCCAGTAACCTTAAGTCCTTCAGCTTGAATGATCTAAAAGAGGCAACTAAGAACTTCCGGCGAGAAAATTTAATCGGAGAGGGAGGATTTGGGCGTGTCTTCAAAGGATGGATTGATGAGAACACATACGGTCCTACAAAACCAGGCACTGGAATTGTAGTGGCCATTAAAAATCTTAAGCCAGAAAGCTTCCAAGGCCACAAGGAATGGCTTCAAGAAGTGAATTATCTTGGGATGCTTCAGCATGAAAATTTGGTGAAACTTATTGGTTATTGCTTGGAAGGTAAAAACCGGCTTCTGGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAGAATCATTTATTCAGAAAAGGTGTTCAACCTATGGCCTGGGTTACAAGGGTCAACATTGCAATTGGTGTTGCAAGAGGATTAGCATTCTTACATTCCCTGGATCAAAATGTTATCTTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCGGACTTCAATGCAAAGCTTTCGGATTTCGGCTTGGCAAGAGATGGTCCTACTGGAGATAATACTCACGTTTCAACTAGAGTTATAGGAACTCAAGGGTATGCTGCACCAGAGTATGTTGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGCTTTGGTGTAGTCTTGTTAGAATTACTAACCGGAAGGCGTGCGGTGGAAGACGATGGACCTGGATTTTCGGAGGAGACCCTGGTGGATTGGGCAAAGCCATTCTTAAATGATAACAGAAGAGTTCTGAGAATAATGGATACAAGATTGGGGGGTCAATACTCCAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTGCAATGCCTTAACACTGACCCCAAATTTAGACCACCTATGGTGGAAGTTCTAGCAGCATTGGAAGCACTTAATTCCTCAAATTCATTTACGCGGACACCGAAACATGAGAGTCATTCAACCAAAATATCTGGTGGTCCTTCACAAAAGTAA 1149 0.4212 MGNACAKGKPVAHVSSSNFSGSKKPASKPKQYSNSSEQRSAPTTSELNVPKSISSNLKSFSLNDLKEATKNFRRENLIGEGGFGRVFKGWIDENTYGPTKPGTGIVVAIKNLKPESFQGHKEWLQEVNYLGMLQHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGVARGLAFLHSLDQNVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDDGPGFSEETLVDWAKPFLNDNRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNTDPKFRPPMVEVLAALEALNSSNSFTRTPKHESHSTKISGGPSQK* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0516 382 SMART serkin_6 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0516 382 SUPERFAMILY Protein kinase-like (PK-like) 46 360 IPR011009 -
Gso13g0516 382 Pfam Protein tyrosine and serine/threonine kinase 75 352 IPR001245 GO:0004672|GO:0006468
Gso13g0516 382 CDD STKc_IRAK 78 356 - -
Gso13g0516 382 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Gso13g0516 382 Gene3D Phosphorylase Kinase; domain 1 46 157 - -
Gso13g0516 382 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0516 382 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 380 - -
Gso13g0516 382 MobiDBLite consensus disorder prediction 361 382 - -
Gso13g0516 382 Gene3D Transferase(Phosphotransferase) domain 1 158 377 - -
Gso13g0516 382 MobiDBLite consensus disorder prediction 13 49 - -
Gso13g0516 382 PANTHER OS01G0588500 PROTEIN-RELATED 17 380 - -
Gso13g0516 382 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0516 Gso-Chr13 17580878 17585156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0516 51 359 Glycoside Hydrolase AT3G07070 50.000 2.54e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso13g0516 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0516 - - gmx:100800654 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1005 18 16053168 16056668 Gso13g0516 13 17580878 17585156 GST
Gso13g0516 13 17580878 17585156 Gso14g0340 14 3057723 3061929 PCT
Gso14g0340 14 3057723 3061929 Gso13g0516 13 17580878 17585156 PCT