Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0514 ATGAATCTCCAATCATGCATATTGACAGCTATGAGTAGCATGACAAGTGGGGGTGATACCCGGAAGATATCCAAAGGTCGTTGGTCATCATCCTTAGATGAAAAAGTTGGAGTTGGAGGTAACGTGGGAGGAGAAGGTCCTCTGAAGAAAGGCCCATGGACTGCAGCAGAGGATGCAATTTTGGTAGAATATGTCAAAAAGCACGGACAAGGCAATTGGAATGCAGTACAAAAGCATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAGACCAGATCTAAAGAAAGGTGCATTTACTGCCGAGGAAGAGAACCAAATCCTTGAACTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCAGGACGTACGGATAATGAGATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCAGGCTTACCAATCTACCCTGAAGAATTGTGCCAACGGATACTTAATGGCAATCAAGAAAGTCAAAATGTTGGCACCATGACAAATGAAGCATGCCATCATGATGATCTGTCACAAACAAACAATTTTGATATACCAGATGTAGAATTCAAAAATTTCAAATTCCGTCATGGTCTACCACATGTACCATCGATTTTTGATATGCCTGAAAGCAGCTTGTTTGATCAAAGCTCTGACTCATCCCATAGTTATAACTTCTTGTTCCCAACCATGCGTCCTACAAAACGCCCTCGGGAGTCAGAAATGCTATACGATAGTTTTGGCAGTTGTTCAATTAATGCTGCCCCACTATTTGATCAGTATGGCAATTATACGTTTGAGAAAATTTCTGACCATCCTGGGTTGTCTCTTCCATGTGATCCCGTTCTTAACACCACTGATCAGTTTCATGGTGATAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTGCTTCTGTGCCCATATTTGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTCAACATGGTAGCTGGGGCACGCCTATGTCCCCACTTCCTTCACTGGAGTCTGTTGATACATTGATTCAGTCTCCTACACTTGAGCCTATTCTATCAGATCCCATTTCTCCACAAAGCAGTGGTTTGCTAGAAGCGATAGTCTACAACTCGAAAAGCTTGAAAGGCTCAAACAATGATTTATTATTGCAAGAGACAATTGCTACAGCCAATGAAGTAGCTAATATTTCAACCTTGAATCATTCCTTTCAGACAGAATGGGATGAACTAGGCGATCCAAATTCCCCCTTAGGTCAATCTGCTGCTTCAGTCCTGACTGACTATACTCCTGTACGAATGTGCTCTGTGGATGGGTATCAATCAACTGAAACCAGTCAGGATCATGATGATAAGCATGAAGCACCTACCACCCAGTTCCCAGATAGTTCCAGTAAGAAAAAAATATTGAAACAGGTGGATTACACACAGCCAGATGCTTTACTTGACTTGGGTTGGTTTGGGAATAATACTAAGTATGAAAGCGATCAATTTGTTCAGCAAGATGCTTTGGGTGCACTTTTTGGTGACAATTGTCAGCATCAGCCATAG 1605 0.4312 MNLQSCILTAMSSMTSGGDTRKISKGRWSSSLDEKVGVGGNVGGEGPLKKGPWTAAEDAILVEYVKKHGQGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFTAEEENQILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPEELCQRILNGNQESQNVGTMTNEACHHDDLSQTNNFDIPDVEFKNFKFRHGLPHVPSIFDMPESSLFDQSSDSSHSYNFLFPTMRPTKRPRESEMLYDSFGSCSINAAPLFDQYGNYTFEKISDHPGLSLPCDPVLNTTDQFHGDNLTGSHAALNGNASASVPIFGAMKLELPSLQYPETQHGSWGTPMSPLPSLESVDTLIQSPTLEPILSDPISPQSSGLLEAIVYNSKSLKGSNNDLLLQETIATANEVANISTLNHSFQTEWDELGDPNSPLGQSAASVLTDYTPVRMCSVDGYQSTETSQDHDDKHEAPTTQFPDSSSKKKILKQVDYTQPDALLDLGWFGNNTKYESDQFVQQDALGALFGDNCQHQP* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0514 534 CDD SANT 52 97 IPR001005 -
Gso13g0514 534 ProSiteProfiles Myb-like domain profile. 45 97 IPR001005 -
Gso13g0514 534 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 11 530 - -
Gso13g0514 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 97 IPR017930 -
Gso13g0514 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 152 IPR017930 -
Gso13g0514 534 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Gso13g0514 534 MobiDBLite consensus disorder prediction 459 483 - -
Gso13g0514 534 CDD SANT 105 146 IPR001005 -
Gso13g0514 534 Pfam Myb-like DNA-binding domain 53 113 - -
Gso13g0514 534 Gene3D - 49 102 - -
Gso13g0514 534 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 530 - -
Gso13g0514 534 SMART sant 49 99 IPR001005 -
Gso13g0514 534 SMART sant 102 150 IPR001005 -
Gso13g0514 534 Gene3D - 105 187 - -
Gso13g0514 534 SUPERFAMILY Homeodomain-like 48 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0514 Gso-Chr13 17511580 17523444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0514 48 529 MYB Transcription Factor Family AT5G06100 40.000 4.30e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g0514 Myb_DNA-bind_6 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0514 K09422 - gmx:100800658 1066.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0514 13 17511580 17523444 Gso14g0335 14 3017803 3023460 PCT
Gso14g0335 14 3017803 3023460 Gso13g0514 13 17511580 17523444 PCT