Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0513 ATGAAAAGATCGCTCTTGGGTCCTTGCAAAGCTGAGGTTGAATCAACAACGGCTGATGAGGCAACTGCAGCGAAAAGCCCTTCACCAATGCTACGTGAGTGCAATATTTGCGGCAAGGTCTTCAGCAGCGGCAAGGCTTTGGGGGGTCACCGAAGATCGCACTTTCAAAAGCACCAGAAGAAGGTAAAAGTCCGTTTCACCAATCACTCGTCAAAAGCTGGTGATAGCAGCAACATTAATAGGGCTAATAATTGTGATTACGATGCTGATGATGATGGGAAACGCATTTGTTGCATTTGCAAGAAGGAATTTCCCACCAAAAACGCATTGTTTGGCCACATGCGATCTCACCCTGAGAGGTCATGGAAGGGTGTGTCTCCTCCCACTCGTTCTCCCAATAAGAACTCCTCATCTTCTTCTCTCTCTTCTTACACTTTTTCTTCCCAAAATTCTGATTCTATGGAGAAAAACATGGAACAGTATCGTGATGATGATTATGTTGATTGTGTTGGTGGGGGTGGGGGTAATATTGTTATTATTGATCTTTCAACTTTTACTTCACCCAGTTGGCTTAAGACTGATGTGAGAGGCAGAAAGTGTATTGGGGCTTATGAGGCTGCTGAAACCCTCACTTACCTAAGTGCTTATTCTAAGTACTTTTGCAGTGAGTCTAATAGGGTTTCTCCCAAGAAGGATGAAGTGCTGTCGAAAAGTGCTCCACCTCTAATCAAGAATGGCAAAAGGAAGGTTGGTGAATCGTCATCGAGCAAGAAACATAAGGTGAAAAAGATTAAGTTTTATCTGAATGGTGAATTGAAGATCGGAAAGAAAAATGATGGGGACGGTGAATTTGATGATGATAAGGGTGAGAAGCTGAATAGGTGCAAGGGTTTATCTAAATCTGGGGTTGGAAGAATTTTGTATATGGATGATGAGGTGGAAGAGGAGGAGGGTGTGGACGAGGCTTTCGACGATGTGATCACTGAGGTGGTTGCTCCTGCTAAGGTGCAAGATCACGTTGATGAAAGGAAGGTGAAGAGGGTGGTGGACCATAAAGGGAAGAACAGTAAGAAACTGGTGATGAAATTTAAGGCAAAAGACACAGAATATGAGAATGGAGGTCAAGAGAAAGAGAAAGTGGGTGGGTATAAATGTGGAGCTTGTGGGAAAAAATTTTCAACTTTCCAAGGCTTGGGAGGGCACAGATCAGTGCACAAGGAGAAGAACACTGAGATCATGGACGAGTCGAACCGCTCCAAAGCTGTTGTTGCTGATCAAGAAGACAATTCTTCCAGCTCTAGTAACATGCACAAGGTGGATGAGGCCACAATGAATGAAGCACCATTACCAACAGACGAGACAACAGCGAATGAAAAGGCACCATTGCTGGCAGATGAGGCATGTCAATCTTCTCCATGTACCAAGAAATTGGATTTTGATCTGAATGAGCTGCCTTGTGGTATGAAGGATTAA 1473 0.4386 MKRSLLGPCKAEVESTTADEATAAKSPSPMLRECNICGKVFSSGKALGGHRRSHFQKHQKKVKVRFTNHSSKAGDSSNINRANNCDYDADDDGKRICCICKKEFPTKNALFGHMRSHPERSWKGVSPPTRSPNKNSSSSSLSSYTFSSQNSDSMEKNMEQYRDDDYVDCVGGGGGNIVIIDLSTFTSPSWLKTDVRGRKCIGAYEAAETLTYLSAYSKYFCSESNRVSPKKDEVLSKSAPPLIKNGKRKVGESSSSKKHKVKKIKFYLNGELKIGKKNDGDGEFDDDKGEKLNRCKGLSKSGVGRILYMDDEVEEEEGVDEAFDDVITEVVAPAKVQDHVDERKVKRVVDHKGKNSKKLVMKFKAKDTEYENGGQEKEKVGGYKCGACGKKFSTFQGLGGHRSVHKEKNTEIMDESNRSKAVVADQEDNSSSSSNMHKVDEATMNEAPLPTDETTANEKAPLLADEACQSSPCTKKLDFDLNELPCGMKD* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0513 490 MobiDBLite consensus disorder prediction 413 458 - -
Gso13g0513 490 SUPERFAMILY beta-beta-alpha zinc fingers 96 405 IPR036236 -
Gso13g0513 490 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 490 IPR044653 GO:0003700
Gso13g0513 490 MobiDBLite consensus disorder prediction 118 155 - -
Gso13g0513 490 SMART c2h2final6 383 405 IPR013087 -
Gso13g0513 490 SMART c2h2final6 32 54 IPR013087 -
Gso13g0513 490 SMART c2h2final6 95 117 IPR013087 -
Gso13g0513 490 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gso13g0513 490 MobiDBLite consensus disorder prediction 423 440 - -
Gso13g0513 490 Pfam C2H2-type zinc finger 33 54 - -
Gso13g0513 490 Pfam C2H2-type zinc finger 383 407 - -
Gso13g0513 490 Pfam C2H2-type zinc finger 96 119 - -
Gso13g0513 490 MobiDBLite consensus disorder prediction 1 24 - -
Gso13g0513 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 383 410 IPR013087 -
Gso13g0513 490 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 2 490 - -
Gso13g0513 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Gso13g0513 490 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Gso13g0513 490 Gene3D Classic Zinc Finger 32 117 - -
Gso13g0513 490 Gene3D Classic Zinc Finger 352 444 - -
Gso13g0513 490 SUPERFAMILY beta-beta-alpha zinc fingers 33 58 IPR036236 -
Gso13g0513 490 ProSitePatterns Zinc finger C2H2 type domain signature. 385 405 IPR013087 -
Gso13g0513 490 MobiDBLite consensus disorder prediction 126 155 - -
Gso13g0513 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0513 Gso-Chr13 17492908 17494380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0513 10 137 C2H2 Transcription Factor Family AT2G26940 36.029 1.81e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g0513 zf-C2H2_6 5.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0513 - - gmx:102664324 902.508