Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0512 ATGGCCGTTACCTTCTCAAATCTCCACACAGAATCAGGTCTCAAGTCCCTCGACGACTTCCTCTCTGGGAAGGTCTACGTTTCTGGGGATCAGTTCACAAAGGACGACATCAAAGTGTATGGTGCTGTTTTGGAGAAGCCAGGTGACTCTTTTCCCAATGCTGCCAAGTGGTACGAGGTTGTCTCATCTCAGCTTGCTGCAAGCTTCCCCGGCAATGCTCAAGGGGTGAGATTCAGTGGCAAAGCTTCTGCTCCAGCGGAGGCTGCTCCTGCGAAACCGGATGCTTCTGCTGCTGAAGATGATGATGACCTTGATCTCTTTGGCGATGAGACTGAGGAAGACAAAAAGGCAGCAGAGGAAAGGGAGGCTGCTAAGAAGTCTACCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGCTTGACGTTAAGCCTTGGGATGATGAAACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTGTGGGGAGCATCCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACTATTGTCGATGACCTTGTATCTGTGGACACCCTTGTTGAGGAGACTCTCACAGTTGAGCCCATCAATGAGTATGTCCAAAGCTGTGACATTGTTGCATTCAACAAAATCTAA 675 0.483 MAVTFSNLHTESGLKSLDDFLSGKVYVSGDQFTKDDIKVYGAVLEKPGDSFPNAAKWYEVVSSQLAASFPGNAQGVRFSGKASAPAEAAPAKPDASAAEDDDDLDLFGDETEEDKKAAEEREAAKKSTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLVEETLTVEPINEYVQSCDIVAFNKI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0512 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Gso13g0512 224 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 224 - -
Gso13g0512 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 100 108 IPR001326 GO:0003746|GO:0005853|GO:0006414
Gso13g0512 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Gso13g0512 224 MobiDBLite consensus disorder prediction 77 107 - -
Gso13g0512 224 Gene3D - 128 224 IPR014717 -
Gso13g0512 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 224 - -
Gso13g0512 224 CDD EF1B 133 224 IPR014038 GO:0003746|GO:0006414
Gso13g0512 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Gso13g0512 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Gso13g0512 224 SUPERFAMILY GST C-terminal domain-like 9 66 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0512 Gso-Chr13 17442835 17445348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0512 1 224 Eukaryotic Initiation Factors Gene Family AT5G12110 71.930 3.09e-106 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0512 K03232 - gmx:100306132 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0512 13 17442835 17445348 Gso14g0334 14 3011962 3014906 PCT
Gso13g0512 13 17442835 17445348 Gso2g2351 2 48098708 48101262 PCT
Gso14g0334 14 3011962 3014906 Gso13g0512 13 17442835 17445348 PCT
Gso2g2351 2 48098708 48101262 Gso13g0512 13 17442835 17445348 PCT