Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0511 ATGTCAAGTGGAGCAACATACTGGTGTTACACATGCAGGCAGCCAATCTGCCTTGCAAGGAGGGATCACATTTGCCCCTACTGTGACGAAGGCTTCTTGCAAGAACTTGATGAATTGCAAGGAGGTATGGAACAAAGAGGTTCTGAACCAAGAATGGGTGGAAGATACATAAACTTTGGTGTTAGGAGGCCTGGTTCTACCCCTCTTCCTGAATCATGGACTCGAGGTGTGTTCATATTTCCCAATCAAGAGGTGGCCGCAGATCGGGAAGGATTCTTTGAACAACACATTACAAATGACCCGCTTGGTGCATCACAATCTTCAATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTCTACTCAAATCCAAAGTGTTCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGCATCGTTCCATGGTTAGTTCATCATAACTCATGTCCTGTTTGCCGTGGTAAGCTGCCACCCGAAGGACATGTTAGTTCTCGTGGTAGTCAAATTTGGAGAGGAAGGAATGTCAATGGTAATAGTGAAAATGATATCTATAGGGGTAGGGAGAATAGACAGTTCAACGATGGATGGAGAAATCTACTATCATTTTTGAATTTTTGCGGCCAATCCTTTCTTCTAATTCAAATACTTAATCGTTGGAGCTGA 711 0.4318 MSSGATYWCYTCRQPICLARRDHICPYCDEGFLQELDELQGGMEQRGSEPRMGGRYINFGVRRPGSTPLPESWTRGVFIFPNQEVAADREGFFEQHITNDPLGASQSSIDAMPTIKITHEHLYSNPKCSVCIERFEVGSEARKMPCDHIYHSDCIVPWLVHHNSCPVCRGKLPPEGHVSSRGSQIWRGRNVNGNSENDIYRGRENRQFNDGWRNLLSFLNFCGQSFLLIQILNRWS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0511 236 SUPERFAMILY RING/U-box 108 175 - -
Gso13g0511 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 175 IPR013083 -
Gso13g0511 236 Pfam Ring finger domain 127 169 IPR001841 -
Gso13g0511 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 50 219 - -
Gso13g0511 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 1 41 - -
Gso13g0511 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 41 - -
Gso13g0511 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 50 219 - -
Gso13g0511 236 SMART ring_2 128 168 IPR001841 -
Gso13g0511 236 ProSiteProfiles Zinc finger RING-type profile. 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0511 Gso-Chr13 17412703 17415427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0511 109 184 C3H Transcription Factor Family AT3G60080 50.000 6.69e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0511 K11982 - gmx:100815972 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0511 13 17412703 17415427 Gso14g0333 14 3006996 3009569 PCT
Gso14g0333 14 3006996 3009569 Gso13g0511 13 17412703 17415427 PCT