Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0500 ATGTCAGAAAACATGTATCCTAGGTTGTTGTTTTTTGACCATACCCATTCGAAGATGGCATGGGTTAAGCATCAAATCCAGCAAAAAGATGGTTACTTGAGCTACTCACCACCCCTTTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCCCCTTACCCTCTTGGTGCTACTTTCCACAAGGAATCATCATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGCCTCCTCCACCTGCTTATTAGATTTCTCATAAAACACCCTTCTTCTGCATCTGCTCAATCCAACAGACACCAAGAACTTTCCACATCTGATGCACTCCAGAGGCAGCTTCAGCAGCTCTTCCACCTCCATGACTCTGGCTTGGATCAGGCTTTCATTGATGCTCTTCCTGTTTTCCAGTACAAGGAGATTGTGGGGTTGAAGGAGCCCTTTGACTGTGCTGTCTGCTTGTGTGAGTTTTCTGAGAAGGATAAGCTCAGGTTGTTGCCTATGTGCAGCCATGCCTTTCACATCAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTCACTCAAGGGTTTTCCATTGAGAACCCTATATTTGACTTTGATGATCTGAGGGAGGATGAAGGGTGCCCTTGTAATGGGGAGAATGGATTCAATACTAGGCAGAAAACAGTTGTGGTTGAAGAAAGTGTGGAGAAAGAGAAAGGTGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTGAGTGTGAAGGGGGGTGGGGAGAGTGAAGTGGGAGAGACAAGTAGTAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGGTCTTACCAATATGTGGTTGGGAATTCAGACCTAAGGGTGACTTTGAACCATGATGAAATTGGTAAAGGTCAAGTCACAAGGCTCACCAAAGGAATGGAACTTGATGATGGGAAGGTTTCAGTGGAGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTGCCTACTTCTTTGGATGGTCAATTTGGCAGGCCAATGCCTTCTTATCTAAACACAGATTTTCCAAGGATGAGGGAACCAGAAGGGGCATGA 1233 0.4477 MSENMYPRLLFFDHTHSKMAWVKHQIQQKDGYLSYSPPLLSSSSSSSSSSSSSSPPYPLGATFHKESSLPSSTPPPPPSGTRISPAVLFIIVVLAVLFFISGLLHLLIRFLIKHPSSASAQSNRHQELSTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGCPCNGENGFNTRQKTVVVEESVEKEKGVFPVRLGKFKKLSVKGGGESEVGETSSSNLDARRCYSMGSYQYVVGNSDLRVTLNHDEIGKGQVTRLTKGMELDDGKVSVEEGDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPTSLDGQFGRPMPSYLNTDFPRMREPEGA* 411
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0500 410 Pfam Ring finger domain 173 216 IPR001841 -
Gso13g0500 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 222 IPR013083 -
Gso13g0500 410 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Gso13g0500 410 SUPERFAMILY RING/U-box 153 222 - -
Gso13g0500 410 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 19 385 - -
Gso13g0500 410 CDD RING-H2_PA-TM-RING 173 216 - -
Gso13g0500 410 SMART ring_2 174 215 IPR001841 -
Gso13g0500 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 385 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso13g0500 Gso-Chr13 17131412 17133411 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0500 80 380 C3H Transcription Factor Family AT2G18650 42.985 9.32e-58 193
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0500 - - gmx:100806337 737.643
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0500 13 17131412 17133411 Gso19g0102 19 1110296 1113135 GST