Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0496 ATGTCGCAGCAAGGGTTCGCGATCGAGCTATACTTAGAGCCAGCGCTGGAGAATCAGGTTCTGAAAGCATGGAACGTTCTGGCGCGGAGACAAATCAGCACAGAGCTGATAGAAATGGAGTCTCGGCCACACATAACCCTATTCTCGGCACCATTTCTAGAACCTTCCAAGCTCGATTCTCTCCTAAAAGTGTTCGCCTCCAAGCACGACCCTCTCCCTCTCACTTTCTCATCCCTCGCCACTTTCCCCAACAACCTCCTCTTCCTCGCCCCAACCCCTTCCCTCTCCCTCCTCCACTTTCAGTCACAGCTCTGTGACGCTATCAGAAAAGAAGGCATCGAAATCGCTCATGAATTTGCTTTCAATTCGTGGATCCCTTATTGCTCCGTTGCGCACCATGTCCCCCAAAACAGAATGCCTGAGGCTTTCTCACTCTTGAGGGAACTGAAGCTTCCGGTTTCCGGTTACGCTATGGATGTTGCGCTCGTACAGTTCTCTCCGGTTCGGGAAATCTTCTCGTTTGTGCTCGGCAACAACGTAGACTCGTGA 549 0.5173 MSQQGFAIELYLEPALENQVLKAWNVLARRQISTELIEMESRPHITLFSAPFLEPSKLDSLLKVFASKHDPLPLTFSSLATFPNNLLFLAPTPSLSLLHFQSQLCDAIRKEGIEIAHEFAFNSWIPYCSVAHHVPQNRMPEAFSLLRELKLPVSGYAMDVALVQFSPVREIFSFVLGNNVDS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0496 182 SUPERFAMILY LigT-like 6 136 IPR009097 -
Gso13g0496 182 Pfam 2'-5' RNA ligase superfamily 42 163 - -
Gso13g0496 182 Gene3D Cyclic phosphodiesterase 6 178 - -
Gso13g0496 182 PANTHER - 3 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0496 Gso-Chr13 17074087 17075213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0496 4 182 Calmodulin-binding Proteins AT5G40190 60.773 2.39e-77 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0496 - - gmx:100777475 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0496 13 17074087 17075213 Gso19g0109 19 1175775 1176757 GST