Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0493 ATGCATGGGTGCTGTGGTGACCAGTCGAAACACAATCGGCACATGTGGCCTGTACCTGCCAACCCGACCACTGTAGCCATCGATTCTTCACCGTCTCAATTTAAATGCAAAGATGGACGCAAGATTCGTGCTGGTGATTGTGCACTTTTCAAGCCACCTAGGGACTCCCCTCCTTTCATTGGAATAATTCGCAAGTTAACATTTGACAAAGAAGAAAGTCCGAGTTTAGAAGTAAATTGGCTATACCGACCTGCTGATTTGAAGCTTGCTAAAGGGATTGTACTGGAAGCTGCTCCAAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCCTTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAGGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTATATGACATTGAGAACAATTGTTTATGGTGGCTAACCGATAAGGATTACCTTAATGAACGACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCGAAGCCCTTGAATGGTCCAACATCAACGCAGTCATTGAAATCTGGTTCCGATAACGTTCAAAATAGTTCTTCCTTTGGTGCACAGGGTAAGGGGAAAAAAAGAGAGCGGGGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGGTAGAAGATGGAGATTCTGGTCAATTCAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAATAAAGGTGGGCTTGTGGACTTTGAGGCAGTTGACAGACTGGTACAACTTATGCAACCTGATAGTGGTGATAAAAAAATAGATTTGGCAGGGCGGATGATGCTTGTCGATGTAATTGCACTTACGGACCGGTATGAGTGTCTATGCGGGTTTGTACAGCACAGGGGTTTGCCTGTGTTGGATGAATGGCTGCAGGAGGTCCACAAGGGCAAAATCAGTGATGGAAATATGCCTAAAGAAAGTGATAAGTCCATTGACGAATTTTTGTTAGCTTTACTTCGTGCGTTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAAACCTGTAATGTTGGAAAGTCTGTTAATCATTTACGCACCCACAAAAATTATGAAATTCAGAGGAAAGCTAGGAGTCTAGTGGATACATGGAAGAGACGTGTGGAAGCTGAAATGAATATGAATGATTCGAAGTCTGGTTCAAACCGTGCCATGTCTTGGCCAGCAAAGCCAGCAAATTCTGAGTCTCCTCATGTTGGAAATAGGAAAACAGGAGGAGGATCCTCTGATAATGTTGCAAAGAGCTCTTCAATTCAACCCTCAATATCTAAAAATTCCCAATCTAAGTTAAGTTCTGGAGAAGCATTGTCCAAGTCCTCTTCATCTCCTGGCTCAACTAAGTCAATGACTACCTCAGCGAGTGGTAACTCAAAAGATCAAAACAGTAAAGTCTTGGTTGGAGCCGCAGCGTCAGATCTGCCTCTGACACCTATCAAGGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTGTCTCTTGTTCTAGTGAACATGCTAAAGCTATTGGTTCTTGCAGGGAAGATGCGAAGAGCTCCACTGCAGTGTCAACGAGTGTGGGCAAAATTCCTGGTGGTGTGTCTCGAACTCGCAAATCAAGCAATGGTCTACATGGGGCTGGTGTTGCAGTAGGTCCGAAGGAGCACAGCTCTGCAAAAAATTCAGCTAAGAATTCACCTGCTGAAAAAGTTTCACCAACTCGAGTCTCCCATGAAAAATCAGCCGACCAGCCCCTTACTGATCAAGGGAATAATCAGCGATTAATTCTCAGGTTGCCAAACACTGGTCGTAGTCCTTCAAGGGGAGCTAGCGGTGGCTCATTTGAAGAACCAGGTATCATGTGCAGCAAAGCTTCGCCTCCTGCCGACAGGAATGAGAACCAGGACAGAAGAGTGAAAACTAAAACCGAGTGTTTGCTGACCCATGTGTCAAATATGATGAATGAAGCATGCGATGCTAGTGAAGCTTTGCTTGGTGTTGACGAAGGTAAGGGCCCTCCAATGTTCGATGAGCGATGCAGGGCTAATGAAGATGGTGATAAGGTAGAAGAAACATCAAAACCAACTAGTTTGTCATCTGGATTTGTTTCCAGATCAGGGCAGACTTATGATTTAAGCTCCATGAATGCATTAGTTGAAAGCTGTGTGAAGATTTCTGAAGCAAGTGCATCTGCGTCCCATGGAGATGATGGAATGAACCTACTAGCTACTGTGGCTGCAGGGGAAATATCAAGATCTGAAAATGCCTCACCCATGTCATCCCCTGAGAGAAAGTCTCTTCCTGCAGATGAATTGAGCTCAGCCAATGATTTCAAGTTAAAACATTCTGTTGAAGCAGCTGGTTGCACTGTTTCACAGTTGGATGGTGGGGCTATTGCAGAGCATCCTTTGAATACAGTTGATTCATTGCAGATAAAAAATGATTTGAGGCATCCTGCTACGACTTCAGGAGATGGTGAAGCCATTTCATCGAGTTGTGTAGAGAAAAGTGGTGATGGTAGATCTCAGATAAATAGCTCCCCTACAGATTTCTTACAAAATGCTGAAGGTCCATGCTTACGGCCTGAAATCAAAGAGGATACTTCTGAAACTATATTGCCAGATAAAAAGGAGACTAATGTAGACCTCGGAGGTTCTGACTCTAAATTAAAGTCATGCACTTCCTCTATTGATGATGATCAGAAGGTTGATCACATGAATGAGGGAACCATTGAGAATGAGGAATTGTTGGTTCCAAAAGCTGTTGCAAGTGTTAAGTCTGAAAATGAATCAGGTGAAAAGCAAGCTGAGTTATCCTCAGGCGTGGATAATGAGAACCAGATTTGTTCAGAAAAAGCAACAGGTACTGGTATACTAGTGCAAAAGGCCTCTCCAATTGCAGAAAACTGTGAGTCCTTATATTTAAAAAAGGAGTCACCTACTTCTGGTAATGCTGTAATGGTATCTAGGGATGAAAATGCTGATGACATGAAGTCAGTTGTGATTGAGCCTGATGAACGAAGAATGGAGCAGGATTTATCAGTTTCAGATGATGTTAATGAATGTGCTGAAGATACTATGGGCAGAAATGAGGCTATAGGTCAGTGTTCTGGCTCATCAGTTCAGCCAGATTTACCAACAATGCCTAGGAAAGAGAATGATGTGTTTAAAGCATGTGAGCGAAAGTTGGATGCAAATCAATCTGAGGTTGCAGGAGAGAGGCATGCAGGTTCTGCTGCTGGGTCTGATACTGCTGTAAAACTCGACTTTGATTTAAATGAAGGCTTTCCTGTTGATGATGTAAGCCAAGGGGAGATTGCTAGGCAGGAAGATCCTATCACATCATCTGCAGTTCATGTTCCTTGCCTATTGCCTTTTCCTATTTCGTCCATCTCTGGGGGCTTCCATGCTTCAATTACAGTGGCATCTGCTGCAAAGGGGCCTGTTGTTCCACCTGAAAACCCATTGCGGATTAAGGGGGAGCTTGGTTGGAAAGGGTCAGCCGCTACCAGTGCATTTCGGCCAGCTGAACCTAGGAAAAATGCTGAGACAGCATCCACTACTAATGATATTGCTTCTGTTGACGGCACTTCTATCAAACAAGGTCGCCCTCCCTTAGATTTTGACTTAAATGTGGCAGATGAAAGATGTTTTGAGGATGTTGGTTTGCGTGGTTCTTTAGAAGCTGGACCACTTGATCGTAGCACTGGGGGATTTGATCTTGATTTAAATAAAGTTGACGAGACTCCTGAAATTGGCACTTTCTCGCTAAGCAAACTGGAAATTCCTTCTTTACCTAGTAAGCCTTCGTTGTCCAGTGGGTTATCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAACGGGCCAGGCCTTGATGAAGTTGGCAGTGAAGTCCCTGCACGTAGTCAGCAGATGAAAAGTACTGTACCATTCCCAACTGCTGTCCATAGCACACGAACAAACAATGCTGAATTTGGGAATTATTCTGCATGGTTTCCTCCAGGCAATTCTTATTCTGCAATTACTGTCCCACCACTTCTGTCTGGTAGAGGGGAGCAGAGTTATGTTGCTGGTGCTGGGGCACAACGGATAATGGGTCCTACAGGTAGTGCTCCTTTTGGTCCTGAAATCTACAGAGGACCAGTGCTTTCATCCTCTCCAGCCGTTGCTTATCCACCTACTACACCTTTTCCCTATCCAGGATTTCCATTTGAAACCAATTTTCCATTATCTTCAAACTCCTTTTCTGGTTGTTCAACGGCATTTATGGATTCATCTACTGTGGGTGGATTATGCTTTCCTACCATGCCCTCACAGCCAGTTGGGCCTGGTGGTGTTGTTTCATCCACATATCCCCGTCCATATGTTATGAGTCTTCCAGGTGGTACAAGTAATGTGATTCCTGACAGCAGAAAATGGGCAAGTCAAAGTCTGGATCTTAATTCGGGCCCTGGTGGTATGGATACAGAACGGAGAGATGATAGATTGCCTTCAGGATTGAGGCAAATGTCTGTCCCCAATTCACAAGCCTCGATGGAGGACCACTTGAAGATGTTTCAGATGGCTGGTGCATTGAAAAGAAAAGAACCTGATGGTGGTTGGGAGGGAGCCGAGAGATTCGGTTACAAACAAACTTCATGGCAGTAG 4746 0.4423 MHGCCGDQSKHNRHMWPVPANPTTVAIDSSPSQFKCKDGRKIRAGDCALFKPPRDSPPFIGIIRKLTFDKEESPSLEVNWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNERQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSGSDNVQNSSSFGAQGKGKKRERGDQGSDSSKKERLFKVEDGDSGQFRPESMLKSEIAKITDNKGGLVDFEAVDRLVQLMQPDSGDKKIDLAGRMMLVDVIALTDRYECLCGFVQHRGLPVLDEWLQEVHKGKISDGNMPKESDKSIDEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNYEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAMSWPAKPANSESPHVGNRKTGGGSSDNVAKSSSIQPSISKNSQSKLSSGEALSKSSSSPGSTKSMTTSASGNSKDQNSKVLVGAAASDLPLTPIKEERSSSSSQSQNNSVSCSSEHAKAIGSCREDAKSSTAVSTSVGKIPGGVSRTRKSSNGLHGAGVAVGPKEHSSAKNSAKNSPAEKVSPTRVSHEKSADQPLTDQGNNQRLILRLPNTGRSPSRGASGGSFEEPGIMCSKASPPADRNENQDRRVKTKTECLLTHVSNMMNEACDASEALLGVDEGKGPPMFDERCRANEDGDKVEETSKPTSLSSGFVSRSGQTYDLSSMNALVESCVKISEASASASHGDDGMNLLATVAAGEISRSENASPMSSPERKSLPADELSSANDFKLKHSVEAAGCTVSQLDGGAIAEHPLNTVDSLQIKNDLRHPATTSGDGEAISSSCVEKSGDGRSQINSSPTDFLQNAEGPCLRPEIKEDTSETILPDKKETNVDLGGSDSKLKSCTSSIDDDQKVDHMNEGTIENEELLVPKAVASVKSENESGEKQAELSSGVDNENQICSEKATGTGILVQKASPIAENCESLYLKKESPTSGNAVMVSRDENADDMKSVVIEPDERRMEQDLSVSDDVNECAEDTMGRNEAIGQCSGSSVQPDLPTMPRKENDVFKACERKLDANQSEVAGERHAGSAAGSDTAVKLDFDLNEGFPVDDVSQGEIARQEDPITSSAVHVPCLLPFPISSISGGFHASITVASAAKGPVVPPENPLRIKGELGWKGSAATSAFRPAEPRKNAETASTTNDIASVDGTSIKQGRPPLDFDLNVADERCFEDVGLRGSLEAGPLDRSTGGFDLDLNKVDETPEIGTFSLSKLEIPSLPSKPSLSSGLSNGGSVSRDFDLNNGPGLDEVGSEVPARSQQMKSTVPFPTAVHSTRTNNAEFGNYSAWFPPGNSYSAITVPPLLSGRGEQSYVAGAGAQRIMGPTGSAPFGPEIYRGPVLSSSPAVAYPPTTPFPYPGFPFETNFPLSSNSFSGCSTAFMDSSTVGGLCFPTMPSQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWASQSLDLNSGPGGMDTERRDDRLPSGLRQMSVPNSQASMEDHLKMFQMAGALKRKEPDGGWEGAERFGYKQTSWQ* 1582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0493 1581 ProSiteProfiles TFIIS N-terminal domain profile. 322 408 IPR017923 -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 178 252 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 189 217 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 848 884 - -
Gso13g0493 1581 Pfam BAH domain 42 147 IPR001025 GO:0003682
Gso13g0493 1581 MobiDBLite consensus disorder prediction 515 537 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 589 640 - -
Gso13g0493 1581 Gene3D - 33 261 IPR043151 -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 955 976 - -
Gso13g0493 1581 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1581 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 891 915 - -
Gso13g0493 1581 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Gso13g0493 1581 MobiDBLite consensus disorder prediction 1508 1533 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 408 669 - -
Gso13g0493 1581 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1581 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 783 803 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 1560 1581 - -
Gso13g0493 1581 CDD TFIIS_I 330 406 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 1297 1341 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 218 249 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 411 426 - -
Gso13g0493 1581 SMART BAH_4 40 155 IPR001025 GO:0003682
Gso13g0493 1581 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 273 409 IPR035441 -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 1010 1045 - -
Gso13g0493 1581 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 314 419 IPR035441 -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 715 737 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 1022 1045 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 548 573 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 848 915 - -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 1297 1315 - -
Gso13g0493 1581 SMART TFS2_5 328 407 IPR003617 GO:0005634
Gso13g0493 1581 Pfam TFIIS helical bundle-like domain 356 405 IPR017923 -
Gso13g0493 1581 MobiDBLite consensus disorder prediction 434 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0493 Gso-Chr13 17049749 17057122 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso13g0493 BAH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0493 - - gmx:112998769 3051.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0493 13 17049749 17057122 Gso19g0112 19 1193166 1200391 GST