Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0483 ATGGAGATTCAACAAAGCTTGAAGCTCACAATCCACAAGAAATGGCCATCATCACCCAAAAAACCACCAAAAGAATCAGAACCAATAACCCCCACCCCCAACACACCAAAGCTGAAATGGAAGAAAATCTTCTTCCAAACCAAAACCAAAACCCAAATACAAACCCCACCAGAAGAATTCCTCTGTCCTATTTCGCGTTCCCTCATGTTCGACCCCGTCATCGTCTCCTCCGGCCACTCCTACGAACGCTCCTCCGTCGAAGCCTGCAAAAATGTCAATTTTACCCCTCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTCAAATCAGCCATCCTCAAATGGTGCCAATCCACCCACACACCTCCTCCTCACCCCAACAACAACCCCGTACAAACCTTAATCTCCTCCAACCCTAACCTCGTACACACCATAAACCCCTCGAACACAAACCTCGTACACACAAACCCAAACCCCTCCCCAGAGAAAATCTCCGACCAAGATTTGATTCTGAACTCCCTGAGCGAAAACCCACCACACCCCGACAACAACAACCACCTCGTACAAACCTTAATCTCCTCCAACGCAAACCTCGTACACCCAGAGAAAATCTCCGACAAAGATTTGATTTTGAATTCTCTGAACGAAAACCCACCAGTGAAGAACCTCTGCCACCACGCGGAAACCGAGGTTCCCATAAGGCCGACACACTTGTACACGAGCTCCGAGGAATCCATAGCGACAACCTCGGCCTCAACGCCGCCGCTTCAGTTCTCCACGCGCCCGAGCTGCTGCTACTACTCTTCACCTTCGTCTTCAGAACTCGAACCCGCGACAATCCCAGAAGAAGAAGAGATCATGACAAAGCTCAAAAACCCTCAACTCAATGCAATCGAAGAAGCGCTTATCTCTCTCAGAAAACTAACGAGAATAAGAGAAGAAACAAGGCTTCAACTTTGCACCCCTCGGTTACTCTCCGCGTTACGCTCACTCGTTTTGTCGAAGCACGTGAACGTTCAGGTGAACGCTCTGGCATCGGTGGTGAACCTCTCGTTGGAGAAGAGTAATAAAGTGAAGATCGTGCGGTCGGGGATGGTTCCGCCGTTGATCGAGGTTTTGAAGTTTGGATCCTCTGAGGCGCAGGAGCACGGTGCGGGCGCGTTGTTTAGTTTGGCATTGGATGATGATAACAAAACCGCGATTGGGGTTTTGGGGGGTTTGGCACCGTTGCTTCACATGCTCCGATCCGAGAGCGAGCGGACTCGGCATGACTCGGCATTGGCGCTTTACCATTTGTCTTTGGTCCAGAGTAACCGATCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTATTGAATATGGTTAAGTCGGGTCACATGACGGGTCGGGTTTTGTTGATTTTGGGGAACTTGGGTTCCGGGTCGGACGGGAGGGCCACGATGCTTGATGCGGGCATGGTGGAGTGTTTGGTGGGGTTGCTCAGTGGGGCCGAGTCAAGGAGCGGGTCGACTCGAGAGAGTTGCGTGTCGGTGATGTACGCGCTGAGCCACGGCGGGTTGAGGTTTAAGGCAGTGGCGAAGGTGGCTGGGGTGATGGAGGTGATGCAAAAGGTGGAGAAGGTGGGGACTGAGAGAGCTAGGAATAAGGTGAGGAAGATATTGGAGATTATGAGGGCCAAGGAAGTGGAGGAAGAGGATCATGTGGATTGGGAGGAGTTGCTCGACTCGGGATTGCCTTGCCGGACTAGGACTAGACTCGGTGCTGGGTTGGACGACTCAACTCCTAACTCGGCCCAGTTTTGA 1824 0.5219 MEIQQSLKLTIHKKWPSSPKKPPKESEPITPTPNTPKLKWKKIFFQTKTKTQIQTPPEEFLCPISRSLMFDPVIVSSGHSYERSSVEACKNVNFTPQLPDGTTPDFSTLIPNLALKSAILKWCQSTHTPPPHPNNNPVQTLISSNPNLVHTINPSNTNLVHTNPNPSPEKISDQDLILNSLSENPPHPDNNNHLVQTLISSNANLVHPEKISDKDLILNSLNENPPVKNLCHHAETEVPIRPTHLYTSSEESIATTSASTPPLQFSTRPSCCYYSSPSSSELEPATIPEEEEIMTKLKNPQLNAIEEALISLRKLTRIREETRLQLCTPRLLSALRSLVLSKHVNVQVNALASVVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSSEAQEHGAGALFSLALDDDNKTAIGVLGGLAPLLHMLRSESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLNMVKSGHMTGRVLLILGNLGSGSDGRATMLDAGMVECLVGLLSGAESRSGSTRESCVSVMYALSHGGLRFKAVAKVAGVMEVMQKVEKVGTERARNKVRKILEIMRAKEVEEEDHVDWEELLDSGLPCRTRTRLGAGLDDSTPNSAQF* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0483 607 MobiDBLite consensus disorder prediction 1 35 - -
Gso13g0483 607 Gene3D - 288 563 IPR011989 -
Gso13g0483 607 SMART arm_5 481 524 IPR000225 GO:0005515
Gso13g0483 607 SMART arm_5 401 441 IPR000225 GO:0005515
Gso13g0483 607 SMART arm_5 442 480 IPR000225 GO:0005515
Gso13g0483 607 SMART arm_5 360 400 IPR000225 GO:0005515
Gso13g0483 607 SMART arm_5 319 359 IPR000225 GO:0005515
Gso13g0483 607 Pfam Armadillo/beta-catenin-like repeat 401 440 IPR000225 GO:0005515
Gso13g0483 607 SUPERFAMILY RING/U-box 50 127 - -
Gso13g0483 607 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 242 596 - -
Gso13g0483 607 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 37 146 - -
Gso13g0483 607 Pfam U-box domain 57 125 IPR003613 GO:0004842|GO:0016567
Gso13g0483 607 PANTHER U BOX DOMAIN-CONTAINING 37 146 - -
Gso13g0483 607 PANTHER U BOX DOMAIN-CONTAINING 242 596 - -
Gso13g0483 607 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Gso13g0483 607 SUPERFAMILY ARM repeat 295 543 IPR016024 -
Gso13g0483 607 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 131 IPR013083 -
Gso13g0483 607 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Gso13g0483 607 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 413 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0483 Gso-Chr13 16914470 16916875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0483 49 607 U-box Gene Family AT5G40140 51.761 3.23e-172 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0483 - - gmx:100775869 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0483 13 16914470 16916875 Gso19g0119 19 1295440 1297664 GST
Gso13g0483 13 16914470 16916875 Gso18g2069 18 53646134 53651172 PCT
Gso13g0483 13 16914470 16916875 Gso9g1986 9 44275497 44280445 PCT