Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0478 ATGGAGTTTGTTCTAAATTACCTAAATGCCACTGCCATTGGAGTTCTTTCTCTAATCCTCTTCTGTATGTTCTTGTATAATCCTTTCAAAATTGCATTAGGTAAACAAGATGCTCCCACAGTTGCAGGTGCATGGCCAATACTTGGTCACCTTCCACTATTGAGTGGTTCAGAGACACCCCATAGGGTTTTGGGTGCTTTGGCTGATAAGTATGGACCCATATTCACCATCAAGATTGGTGTCAAAAAGGCTTTGGTAATTAGCAACTGGGAAATAGCTAAGGAATGCTTCACCACAAACGACATTGTCGTTTCGTCTCGCCCCAAGCTTGTTGCCATTGAACTCATGTGCTACAACCAAGCCATGTTTGGGTTTGCACCCTATGGTCCTTATTGGCGCCAACTAAGAAAGATTGTAAACTTAGAAATCCTCTCCAATCGCCGAGTAGAGCAACTACAGCACGTTCATGTCTCAGAAGTTCAAAGTTCAATCAAAGAGCTCTTCAATGTTTGGTCAAGCAAAAAGAATGAGTCTGGCTATGCGTTGGTGGAGTTGAATCAATGGTTTTCTCATTTGACATTCAACACGGTTCTTCGAGTGGTCGTTGGAAAGCGACTTTTCGGTGCTACAACTATGAATGATGAGGAGGCTCAGAGATGTCTGAAGGCTGTGGAAGAGTTCATGCGTCTGTTGGGGGTGTTCACGGTGGCAGATGCCATTCCTTTCTTGAGATGGTTTGATTTTGGCGGCCATGAGAGGGCTATGAAAGAAACTGCCAAAGATTTGGACAAGATTTTTGGTGAGTGGTTAGAGGAGCACAAACGAAAAAGGGCTTTTGGTGAGAACGTTGATGGAATTCAAGACTTCATGGACGTGATGCTTTCCTTGTTTGATGGAAAAACAATTGATGGCATACATGCGGATACCATCATCAAATCCACTTTACTGTCAGTAATTTCAGGAGGAACTGAAACAAACACTACTACTCTTACATGGGCAATATGTTTGATATTGAGAAATCCTATTGTATTGGAAAACATTAAAGCCGAACTTAACTTCCAAGTTGGAAAAGAGAGATGTATAAGTGAATCTGATGTAGCGAAGCTAGCATACCTTCAGGCTGTGGTCAAAGAAACTTTTAGATTGTACCCAGCAGGTCCTCTCTCAGCACCTCGTGAATTCATAGGGGATTGCACTTTAGGCGGCTATAATGTCAAAAAAGGAACTCGTCTAATTACAAATCTTTGGAAGATTCACACAGATCCTAGTGTTTGGTCAAATTCATTAGAGTTCAAACCAGAAAGGTTTCTTACCACCCATAAAGACATTGATGTTAGGGGACATCATTTTGAACTATTACCATTTGGTGGTGGTAGAAGAGTGTGTCCTGGAATATCTTTTAGCCTTCAATTGGTTCATTTCACTCTTGCCAATCTTTTTCATTCTTTTGAATTCTTAAATCCATCAAATGAACCCATTGATATGACTGAAACCCTTGGATTAACCAACACTAAAGCCACTCCACTTGAGATTCTTATTAAACCTCGATTATCTCCTAGTTGTTATGTATGA 1572 0.409 MEFVLNYLNATAIGVLSLILFCMFLYNPFKIALGKQDAPTVAGAWPILGHLPLLSGSETPHRVLGALADKYGPIFTIKIGVKKALVISNWEIAKECFTTNDIVVSSRPKLVAIELMCYNQAMFGFAPYGPYWRQLRKIVNLEILSNRRVEQLQHVHVSEVQSSIKELFNVWSSKKNESGYALVELNQWFSHLTFNTVLRVVVGKRLFGATTMNDEEAQRCLKAVEEFMRLLGVFTVADAIPFLRWFDFGGHERAMKETAKDLDKIFGEWLEEHKRKRAFGENVDGIQDFMDVMLSLFDGKTIDGIHADTIIKSTLLSVISGGTETNTTTLTWAICLILRNPIVLENIKAELNFQVGKERCISESDVAKLAYLQAVVKETFRLYPAGPLSAPREFIGDCTLGGYNVKKGTRLITNLWKIHTDPSVWSNSLEFKPERFLTTHKDIDVRGHHFELLPFGGGRRVCPGISFSLQLVHFTLANLFHSFEFLNPSNEPIDMTETLGLTNTKATPLEILIKPRLSPSCYV* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0478 523 Pfam Cytochrome P450 42 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PANTHER CYTOCHROME P450 82C3-RELATED 2 522 - -
Gso13g0478 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Gso13g0478 523 Gene3D Cytochrome P450 34 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 SUPERFAMILY Cytochrome P450 44 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PANTHER CYTOCHROME P450 82A2 2 522 - -
Gso13g0478 523 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso13g0478 523 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0478 Gso-Chr13 16848685 16851170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0478 38 523 Cytochrome P450 AT4G31970 48.276 1.88e-175 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0478 - - gmx:100793075 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0478 13 16848685 16851170 Gso19g0135 19 1539319 1541805 GST