Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0470 ATGAAGAGGGCAAGGGATGATATGTATCCTGCCTCTCAATTCAAACGCCCCTTTGCTTCATCACGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGCGGAGGGGGAGGAGGAGGTGGCAATGGAGGTGTTGTTGGCGGGGGAGCAAATACTTCCCAAAAGCTTACTACCAATGATGCTTTATCCTATTTGAAGGAAGTTAAAGACATGTTTCAGGACCAAAGAGAGAAGTACGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCCCAACGGACTGACACTGCCGGTGTCATAAAAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAATACATTCCTGCCAAAAGGTTATGAGATAACGCTTGATGAGGATGAGGCTCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCAATCAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCTTGTTTACAAATCATTCTTGGACATTTTAAATATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATATTCGAAATTCATTGCATCGCTTCAATGAGCGGGGTTCTATGGCCCCTATGATCCGCCAAATGCCAGCTGACAAGGCACAACGTTATCGACGAGACAGGCTTCCTTCTCACGATCGTGATCATGATATGAGTGCTGAACGCCCTGAGCTGGATGATGACAAGACAATGATGAACATACACAAGGAGCAGAGGAAGCGTGAAAGTAGGGAGAGGAGAATGCGTGATCAAGATGAGAGAGAACATGATCTTGATAACAACAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACGTTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTCGGAAAGCATTCGGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCGCTGTCTACTGATGCTCATTTATCAAGATCATCAAAATTGGAGGACAAGGACAAAGAGCACAAGCGCGATATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAATACATGGGAAAATCAATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGCACTCCCAGCTACCGACTTCTGCCTGCAGATTATCCAATTCCTACAGCTAGTCAGAGATCCGAGCTTGGTGCTCAAGTCTTGAATGACCATTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGAAATCAGTATGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCAGCTGCTAAAAAAGCAGAGGAATTGTATAATAACATCAATGAAAATAAAATTGGCATGGAGACTCTGAACCGTATTGAAGATCACTTTACTGTTCTGAATTTAAGGTGCATTGAACGTTTATACGGTGATCATGGTCTGGATGTTATAGACATATTGCGTAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAAGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTACTTCAAACAGCAAGATTCAAAGAACTTGAGCACCAAATCTTTGGTTACTGAGATTAAAGAAATTAAAGAAAAGCAGCAGAAAGAGGATGATATTATTCAGTCTATTGCAGCTGGAAATAAACAGCCTCTAATTCCACATCTGGAATTTGAATATTCTGATGTTGGGATTCATGAAGACCTGTATAAACTTGTTTGTTATTCATGTGAGGAGTTATTCTCAAGTAAGGAGTTGTTAAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTCCTTCCCAATCTCATGGAACAGAAAGGGCCGAGGACAGAAAAACTGGGCATAATGTTCGCAATTTTGGTGCACCAAATATCGGGGGTGATGGAAGTCCCCGTGGAGACTCTCTTTTAATGAATTCAAGGGTACCAAAATCTGATAAGAATGAAGCTGATGGTAGAGTAACTGAAGTGAAGAATGTTCACCGGACTACTGTGGCATCCAATGATAAAGAAAATGGGTCTGTTGGTGGCGAACTTGTTAGTAGAGATGATCCTTTAATGGATAAAGGACAGAAAAATGTAGAATACAATGATAAAGCTTCTGGATTTAGCAAACAATTTACCTCTGATGAGCAAGGAGCTAAAAACAATGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACTAACTTAGATGTGTCTCCAGGCCGTGCCCTTACTCCATCGCGACCTACTGATGTTGATGACTCTGTATCCAAGTCTCAGGGTGTTAATGCACCATCGGTGGAGGGATGTGACATGGCAACTCCAGTACCAGTGGCCAATGGTGTTCTAAGTGAGAGCAGTAAAGTTAAAACTCACGATGAATCAGTTGGGCCTTGCAAAATTGAAAAGGAAGAGGGTGAATTGTCACCAAATGGTGACTCTGAGGAGGATAACATTGTTGCTTATGGAGATTCAAATGTGCAATCAATGGCCAAGTCAAAGCACAACATTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATCTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCAGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGTGAAGATCATGAAGAGGAGGAGGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATATGTGATGCACAAGCAGGAGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTCGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGTTTTTTAGACTTCATCAAGCTCTTTATGAGAGGCTCTTATCAGCAAAAACACATTCAATGAGCGCAGAAATGAAATGGAAAGCAAAAGATGCTAGTTCACCAGATCCTTATTCAAGATTTATCAATGCATTGTACAACTTGCTTGATGGATCTGCCGAAAATGCAAAGTTTGAAGATGAATGCCGGGCAATTATTGGGAACCAGTCATATGTGTTATTCACATTGGACAAGTTAATATACAAATTGGTCAGACAGCTTCAAACTGTCGCAACCGATGAGGTAGACAATAAGCTTCTCCAATTATATGAATATGAAAAGTCTCGCAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGAGAATATATATCGTTTACAATGTTCCTCTACCCCCTCACGACTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCCGTTTCCATTGATCCAAATTTCTCTTTTTATCTGCACAATGATTTTCTGTCTGTCTTTCCCAACAAAAAGGAGCCCCATGGCATCATACTGCATAGAAACAAACGCCAATATGGAAAATTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCATCTAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGACCAAGAAAGAAAAGACGAACGCCTTCAGGGACCACAACCTCTCGGTTCCGCAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCGTAA 4125 0.4097 MKRARDDMYPASQFKRPFASSRADSYGQNQVPGSGGGGGGGNGGVVGGGANTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIKRVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDELVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYIRNSLHRFNERGSMAPMIRQMPADKAQRYRRDRLPSHDRDHDMSAERPELDDDKTMMNIHKEQRKRESRERRMRDQDEREHDLDNNRDLNLQRFPDKKKSVKKAEGFGMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLSRSSKLEDKDKEHKRDMDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKKAEELYNNINENKIGMETLNRIEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDVGIHEDLYKLVCYSCEELFSSKELLNKIMRLWSTFLEPMLGVPSQSHGTERAEDRKTGHNVRNFGAPNIGGDGSPRGDSLLMNSRVPKSDKNEADGRVTEVKNVHRTTVASNDKENGSVGGELVSRDDPLMDKGQKNVEYNDKASGFSKQFTSDEQGAKNNVSIAIRGENSLNRTNLDVSPGRALTPSRPTDVDDSVSKSQGVNAPSVEGCDMATPVPVANGVLSESSKVKTHDESVGPCKIEKEEGELSPNGDSEEDNIVAYGDSNVQSMAKSKHNIERRKYQSRNGEDESCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVFFRLHQALYERLLSAKTHSMSAEMKWKAKDASSPDPYSRFINALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDNKLLQLYEYEKSRKPGKLNDSVYHANAHVILHEENIYRLQCSSTPSRLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPNKKEPHGIILHRNKRQYGKLDELSAICSAMEGVKVINGLECKIACSSSKISYVLDTQDFFFRPRKKRRTPSGTTTSRFRRDREERFRKLLACS* 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0470 1374 Gene3D Paired amphipathic helix 60 122 IPR036600 GO:0006355
Gso13g0470 1374 SUPERFAMILY PAH2 domain 52 123 IPR036600 GO:0006355
Gso13g0470 1374 Pfam Paired amphipathic helix repeat 162 205 IPR003822 GO:0006355
Gso13g0470 1374 Pfam Paired amphipathic helix repeat 77 121 IPR003822 GO:0006355
Gso13g0470 1374 Pfam Paired amphipathic helix repeat 347 391 IPR003822 GO:0006355
Gso13g0470 1374 MobiDBLite consensus disorder prediction 1 52 - -
Gso13g0470 1374 MobiDBLite consensus disorder prediction 417 437 - -
Gso13g0470 1374 MobiDBLite consensus disorder prediction 966 985 - -
Gso13g0470 1374 Pfam C-terminal domain of Sin3a protein 1094 1341 IPR031693 -
Gso13g0470 1374 MobiDBLite consensus disorder prediction 735 788 - -
Gso13g0470 1374 SMART hdac_interact2seq4b 458 558 IPR013194 -
Gso13g0470 1374 MobiDBLite consensus disorder prediction 802 825 - -
Gso13g0470 1374 SUPERFAMILY PAH2 domain 329 394 IPR036600 GO:0006355
Gso13g0470 1374 Pfam Sin3 family co-repressor 460 552 IPR013194 -
Gso13g0470 1374 MobiDBLite consensus disorder prediction 883 897 - -
Gso13g0470 1374 ProSiteProfiles PAH domain profile. 316 394 IPR003822 GO:0006355
Gso13g0470 1374 PANTHER SIN3B-RELATED 1 1359 IPR039774 GO:0003714
Gso13g0470 1374 Gene3D Paired amphipathic helix 327 396 IPR036600 GO:0006355
Gso13g0470 1374 MobiDBLite consensus disorder prediction 920 941 - -
Gso13g0470 1374 MobiDBLite consensus disorder prediction 241 312 - -
Gso13g0470 1374 Gene3D Paired amphipathic helix 137 209 IPR036600 GO:0006355
Gso13g0470 1374 MobiDBLite consensus disorder prediction 1022 1037 - -
Gso13g0470 1374 ProSiteProfiles PAH domain profile. 138 208 IPR003822 GO:0006355
Gso13g0470 1374 MobiDBLite consensus disorder prediction 18 32 - -
Gso13g0470 1374 MobiDBLite consensus disorder prediction 865 1046 - -
Gso13g0470 1374 Coils Coil 419 439 - -
Gso13g0470 1374 MobiDBLite consensus disorder prediction 243 312 - -
Gso13g0470 1374 SUPERFAMILY PAH2 domain 135 207 IPR036600 GO:0006355
Gso13g0470 1374 MobiDBLite consensus disorder prediction 415 437 - -
Gso13g0470 1374 MobiDBLite consensus disorder prediction 986 1006 - -
Gso13g0470 1374 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1359 - -
Gso13g0470 1374 ProSiteProfiles PAH domain profile. 54 124 IPR003822 GO:0006355
Gso13g0470 1374 Coils Coil 531 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0470 Gso-Chr13 16763320 16773524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0470 38 157 WRKY Transcription Factor Family AT4G12020 48.760 2.29e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso13g0470 Sin3a_C 7.5e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0470 K11644 - gmx:100812405 2623.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0470 13 16763320 16773524 Gso19g0142 19 1664538 1674735 GST