Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0468 ATGGAACGCGGCTTTGGACAAAACCAAGTCCCTGGAAGTGGCAATGGTGGTGATGTTTGTCGGGGAGCAACTACTTCCCAAAAACTAACTATAATTGATGCCGTATCCTATTTAAAGGAAGTCAAAGTGGCGTTTATGGACCAAGTGGTGAAGTATGACATGTTTTGTGAAATCTTGATAGATTTCAAGGCTAAAAGGGTTAACATTTATGATGTCATAAAAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTGGGATTTCAAACTTTTCTGCCAAAGGGTTATAAGATAACATTTGACAAGGATGAGGCTCCTTCGAACTTTGGACAAAACCAAGTCCCTAGAAGTGGCAATGGTGGTGATGTTTGTGGGGGAGCAACTACTTCCAAAGAAGTGACTGCCGCTGATGCCTTATCCTATTTGTGGGAAGTCAAAGCAGCATTTCAGGACCAAAGGGAGAAGTATAACATGTTCATTGAGATCATGAAAGATTTCGAGGCTCGAAGGATTCGCACTAATGCTGTCATAACAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTGGGATTTCAAACTTTTCTACCAGAAGGTTATGAGATAACAACTGACAAGGATGATGCTCCACCAAAGTAA 651 0.4071 MERGFGQNQVPGSGNGGDVCRGATTSQKLTIIDAVSYLKEVKVAFMDQVVKYDMFCEILIDFKAKRVNIYDVIKRVKELFKGHNNLILGFQTFLPKGYKITFDKDEAPSNFGQNQVPRSGNGGDVCGGATTSKEVTAADALSYLWEVKAAFQDQREKYNMFIEIMKDFEARRIRTNAVITRVKELFKGHNNLILGFQTFLPEGYEITTDKDDAPPK* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0468 216 PANTHER PROTEIN, PUTATIVE-RELATED 25 176 - -
Gso13g0468 216 PANTHER PROTEIN, PUTATIVE-RELATED 132 212 - -
Gso13g0468 216 SUPERFAMILY PAH2 domain 131 202 IPR036600 GO:0006355
Gso13g0468 216 ProSiteProfiles PAH domain profile. 27 97 IPR003822 GO:0006355
Gso13g0468 216 PANTHER SIN3B-RELATED 25 176 IPR039774 GO:0003714
Gso13g0468 216 PANTHER SIN3B-RELATED 132 212 IPR039774 GO:0003714
Gso13g0468 216 Gene3D Paired amphipathic helix 33 95 IPR036600 GO:0006355
Gso13g0468 216 Gene3D Paired amphipathic helix 139 201 IPR036600 GO:0006355
Gso13g0468 216 ProSiteProfiles PAH domain profile. 133 203 IPR003822 GO:0006355
Gso13g0468 216 SUPERFAMILY PAH2 domain 25 96 IPR036600 GO:0006355
Gso13g0468 216 Pfam Paired amphipathic helix repeat 156 200 IPR003822 GO:0006355
Gso13g0468 216 Pfam Paired amphipathic helix repeat 51 94 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0468 Gso-Chr13 16745326 16746975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0468 117 214 WRKY Transcription Factor Family AT4G12020 44.444 1.08e-17 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso13g0468 PAH 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0468 K11644 - gmx:102664951 435.261