Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0462 ATGGATCGCAGCAACACCTTTTCCTCCTCGTTCCTTCTGCTGATCTTGTTGGGGTTTCACTTCCACGTGTTCTTCGTTTCGTCTCAGGTCGAAGGCGACGTGAGATGTCTCAAGGGCATCAAGGAAACCCTCTCCGACCCTCTGAACCGCCTCAGCGATTGGCGCTTCGACAACACAACCATAGGTTTCATCTGCAAATTCGCAGGTGTGTCTTGCTGGAACGATAGGGAGAACCGTGTCTTAAGTTTGACCTTACGAGACTTCAAGCTCTCGGGTAAGATCCCCGAGGCCTTGAAGCACTGTGGGAAAAACATTCAAAAGTTGGATCTTGCTTCAAACTCTTTCTCTTTGGAGATCCCACGTGAGATCTGTTCTTGGATGCCTTTTTTGGTTTCTTTAGATTTGTCAAGTAACCAGCTTTCTGGGTTTATTCCACCCACGATTGAGAAATGTTCTTATCTGAATGAGTTGGTGTTGTCGAATAACCAGCTTTCTGGGTCGATTCCCTTTGAGTTTGGGAGTTTAGGTAGGCTCAGGAAGTTTTCTGTGGCCAATAATAGGCTTAGTGGGACAATTTCTGAGTTCTTCAACAGGTTTGATAGGGAGGGTTTTGAAGGGAATAGTGGGCTTTGTGGGGGTCCTCTTGGAGGAAAGTGTGGTGGGATGAGTAAGAAGAATCTTGCTATTATTATTGCTGCTGGGGTGTTTGGTGCTGCTGCTTCGTTGTTGCTGGCTTTTGGGTTGTGGTGGTGGTACCATTTGAGTGGGAAGAAGAAGAAGGGGCATGGGGTTGGTTCTGGTGTTGGTGGTGGTGGTGGTGATTGGGCTTTGAGGTTAAGAGGGTATAAGCTTGTGCAGGTTAGTCTCTTTCAGAAGCCTATTGTGAAGTTGAAGTTGGGGGATTTGATGGCTGCTACTAGTAATTTCAGCGGGGAGAATGTTCTTTTCGCGACGAGGACCGGGACTACGTATAAGGCTGATCTTCCGGATGGGTCCACGCTCGCGGTGAAGCGGTTGAGTGCGTGTAGGATCGGGGAGAAGCAGTTTGGGATGGAGATGAATCGGTTGGGGCAGGTTAGGCACCCTAATCTGGCGCCGCTGTTGGGGTACTGCATTGTGGAGGAGGAGAAGTTGTTGGTTTACAAGCACATGTCGAACGGGACATTGTATTCATTGTTGCATAAGAATGGTGGCGGTGCATTGGATTGGTTGATGAGGTTTAGGATTGCATTGGGTGTGGCGAGGGGGCTTGCGTGGCTGCACCATGGCTGCCACCCTCCGATTATACAGCAGAACATTTGCTCCAGTGTGATTCTTGTCGACGAGGAGTTTGATGCCCGGTTGATGGACTTTGGGCTTGCGAGGCTCATGGCTTCAGACTCAAATGGTAGTTTTGTGAATGGTGATTTGGGGGAGCTTGGGTACATTGCGCCGGAGTATCCTAGTACACTTGTTGCATCACTGAAAGGGGATGTGTATGGGTTTGGTATTTTGCTTTTGGAGTTGGTGACTGGGCGAAAACCTCTTGACGTAAGCAATGGGGAGGAAGAGTTCAAGGGTAGCTTGGTGGATTGGGTGAATATGCATTCTAGTTCTGGCGGAATCAAGGATTGCATTGATAAAGCTATATCTGGAAGGGGACATGATGAGGAGATTCTGCAGTTTCTGAAAACTGCGATGAATTGTGTGGTTTCTCGCCCCAAGGATAGATGGTCTATGTACCAGGTTTATAATTCCTTAAAGAGCATATCCAAAGACCAGAGTTTCTTTGAACATGATGATGAATTTCCCTTGATCTTTGGTAAGCCAGAAAACGAGGTTGTGGCGTAG 1830 0.4798 MDRSNTFSSSFLLLILLGFHFHVFFVSSQVEGDVRCLKGIKETLSDPLNRLSDWRFDNTTIGFICKFAGVSCWNDRENRVLSLTLRDFKLSGKIPEALKHCGKNIQKLDLASNSFSLEIPREICSWMPFLVSLDLSSNQLSGFIPPTIEKCSYLNELVLSNNQLSGSIPFEFGSLGRLRKFSVANNRLSGTISEFFNRFDREGFEGNSGLCGGPLGGKCGGMSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHLSGKKKKGHGVGSGVGGGGGDWALRLRGYKLVQVSLFQKPIVKLKLGDLMAATSNFSGENVLFATRTGTTYKADLPDGSTLAVKRLSACRIGEKQFGMEMNRLGQVRHPNLAPLLGYCIVEEEKLLVYKHMSNGTLYSLLHKNGGGALDWLMRFRIALGVARGLAWLHHGCHPPIIQQNICSSVILVDEEFDARLMDFGLARLMASDSNGSFVNGDLGELGYIAPEYPSTLVASLKGDVYGFGILLLELVTGRKPLDVSNGEEEFKGSLVDWVNMHSSSGGIKDCIDKAISGRGHDEEILQFLKTAMNCVVSRPKDRWSMYQVYNSLKSISKDQSFFEHDDEFPLIFGKPENEVVA* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0462 609 Gene3D Ribonuclease Inhibitor 31 221 IPR032675 -
Gso13g0462 609 Pfam Leucine rich repeat 130 188 IPR001611 GO:0005515
Gso13g0462 609 SUPERFAMILY Protein kinase-like (PK-like) 286 580 IPR011009 -
Gso13g0462 609 Pfam Protein tyrosine and serine/threonine kinase 330 512 IPR001245 GO:0004672|GO:0006468
Gso13g0462 609 Gene3D Phosphorylase Kinase; domain 1 271 383 - -
Gso13g0462 609 ProSiteProfiles Protein kinase domain profile. 309 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0462 609 PANTHER OS07G0107800 PROTEIN-RELATED 11 601 - -
Gso13g0462 609 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Gso13g0462 609 PANTHER - 11 601 - -
Gso13g0462 609 SUPERFAMILY L domain-like 30 199 - -
Gso13g0462 609 Gene3D Transferase(Phosphotransferase) domain 1 384 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0462 Gso-Chr13 16675033 16677584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0462 14 608 Receptor kinase-like Gene Family AT3G28450 62.417 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Gso13g0462 PK_Tyr_Ser-Thr 5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0462 - - gmx:100814544 1126.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0462 13 16675033 16677584 Gso19g0153 19 1847046 1849529 GST