Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0458 ATGCATATTGCATCACCATTACATAATTCACTCAGTCCTTCTCTTGCATTTCTTCTTCTTCTTTGTCTTATTTCTTCTCTCATTTCAAAAATGAGAAGGCCTCCTTGTTGTGACAAATCCAATGTGAAAAGGGGTCTTTGGACTCCTGAGGAAGATGCTAAAATACTTGCCTATGTAGCCAATCATGGAACTGGAAATTGGACATTGGTTCCAAAGAAAGCAGGGCTTAACAGGTGTGGTAAAAGCTGCAGGCTAAGATGGACCAACTACCTAAGGCCTGACCTCAAGCATGATGGTTTTACTCCCCAAGAAGAAGATCTAATTATTAACCTTCATGGAGCCATAGGAAGCAGATGGTCCTTAATTGCAAAAAGACTACCTGGGAGAACAGACAATGATGTCAAGAACTATTGGAACACAAAGCTAAGGAAGAAGCTTATGAAGATGGGAATCGATCCAGTGACACATAAGCCGGTCTCACAAGTCCTCTCTGACTTAGGAAGCATTAGTGGCCTCCCAAACACCACTAACCAAATGGCTTTTATCAACAAGGACTTGATGATGAGCAACATGCCACCAACAAAAACTGAACCATCAGATTCCAACAAGTCAATGGTGGAGCACACACAAGAGGGTCAAGTTCACTCTTGGGAACACCACATTCCTTACCAAGTCATCATCAACTCAGAAAATGTTCAACCACAAGTGTTAAGTGAAGCTGCATCCTCAACCTCATCCTCGTCTTCCTCTAATCTCACACAATTAGGATCACCACAGTCCTACTCTTGCCAAACTCCTCAGGCTCAAATTTCCCCTCCTTGTTCCTCCTTTGATTGGAGTGAGTTTCTTCACAGTGACTCATTTAATTGGTCATTGAATCCCCCCTCAGGTCTAATGCAAAGTGAAGCTGAACTTTCCGACAATACCAAAAGCAATGGCCATGACATGCAAGGAGCTGCAAGTGAGGGTTCTGGTTCTGGTTCTGGTGCTGTTGCTTGTGGTGCTAGCATGGAATATCAAATTAACAAGCAGTGTGAAGCTCATTCATTTGTGGATGGTATTTTGGACAGGGATAGTGAGATAAGAGCAGCATTCCCTCAGCTTTTGGATGCTTCTTTTGACTACTAA 1128 0.4291 MHIASPLHNSLSPSLAFLLLLCLISSLISKMRRPPCCDKSNVKRGLWTPEEDAKILAYVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDGFTPQEEDLIINLHGAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGLPNTTNQMAFINKDLMMSNMPPTKTEPSDSNKSMVEHTQEGQVHSWEHHIPYQVIINSENVQPQVLSEAASSTSSSSSSNLTQLGSPQSYSCQTPQAQISPPCSSFDWSEFLHSDSFNWSLNPPSGLMQSEAELSDNTKSNGHDMQGAASEGSGSGSGAVACGASMEYQINKQCEAHSFVDGILDRDSEIRAAFPQLLDASFDY* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0458 375 MobiDBLite consensus disorder prediction 191 213 - -
Gso13g0458 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 95 IPR017930 -
Gso13g0458 375 Pfam Myb-like DNA-binding domain 44 91 IPR001005 -
Gso13g0458 375 Pfam Myb-like DNA-binding domain 100 140 IPR001005 -
Gso13g0458 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 146 IPR017930 -
Gso13g0458 375 PANTHER F14D16.11-RELATED 31 375 - -
Gso13g0458 375 MobiDBLite consensus disorder prediction 306 327 - -
Gso13g0458 375 MobiDBLite consensus disorder prediction 237 267 - -
Gso13g0458 375 Gene3D - 98 161 - -
Gso13g0458 375 MobiDBLite consensus disorder prediction 306 324 - -
Gso13g0458 375 SUPERFAMILY Homeodomain-like 41 138 IPR009057 -
Gso13g0458 375 ProSiteProfiles Myb-like domain profile. 39 91 IPR001005 -
Gso13g0458 375 Gene3D - 37 97 - -
Gso13g0458 375 CDD SANT 100 142 IPR001005 -
Gso13g0458 375 SMART sant 96 144 IPR001005 -
Gso13g0458 375 SMART sant 43 93 IPR001005 -
Gso13g0458 375 CDD SANT 47 91 IPR001005 -
Gso13g0458 375 PANTHER F14D16.11-RELATED 31 375 - -
Gso13g0458 375 MobiDBLite consensus disorder prediction 191 211 - -
Gso13g0458 375 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0458 Gso-Chr13 16637238 16639390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0458 31 375 MYB Transcription Factor Family AT3G28470 47.740 9.53e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g0458 Myb_DNA-binding 4.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0458 K09422 - gmx:100815077 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0458 13 16637238 16639390 Gso19g0156 19 1880774 1883441 GST