Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0445 ATGGAAAGAATAATGGTTGGAAGTGCAACAAAGGTTGCTTTCACCCTCTTGGCCACTTTCGCCATTGTCATTCCATGCCTTGAGGCTGGCATTGCTGAGTTTGACGATTTTCTCAAAGCCCAAGCTGATGAAGCCCATAAAATTGCTCTTGATTCCTATGTCCCAGAGCCCCACGATGTCGCCCATGAACTCAATTTCCATGTTCATATGGCACTGGAAAACTCCACAAGGAGGGAACTAAGGCAGAGGAAACTTAGAGGAGGAGGCAAATGTCAAGCCTCCAACCCCATTGACGCTTGCTGGAGATGCAATAAAGACTGGGCCAATGACCGGTTCAGGCTAGCCAAGTGCGGCAAAGGGTTCGGAAGACGGGCCACCGGCGGGCTCGGTGGTCCCATCTATGTCGTCACCGATAATTCCGATGACGACATGGTGAACCCTAAGCCGGGAACTATCCGTCACGCTGTCACCCAAAAAGGCCCCTTGTGGATCATCTTCGGACACAGCATGATCATCAGTTTGAGGCAAGAGCTGATGATTTCCTCCGACAAGACCATCGATGGTCGTGGCGCAAACGTGCAATTTAGGGGCGGTGCTGGCCTCACCATTCAGTTCGTGAACAACGTTATTATCCACGGAGTTCGCATCAAGGACATCGTACCTAAGGATGGTGGCATGATTAGGGACTCCGCCGACCATTATGGATTGAGAACAAGGAGTGATGGTGATGCCATCTCCATTTTTGGATCCACCAACATTTGGATCGATCATGTTTCCCTCTCTAACTGTGCCGATGGTCTTATCGATATCATCCAAGGCTCCACTGCCATCACCATCTCAAATTGCCACATGACCAAACATAATGATGTGTTTCTCTTTGGTGCTAGTGACTCATACAACGGAGACAAGATCATGCAGATCACAGTGGCATTCAACCACTTCGGGCAAGGACTGGTCCAGAGGATGCCAAGGTGCAGATGGGGTTTCGTGCACGTCCTCAACAACGACTACACCCACTGGTTGATGTATGCAATCGGTGGGAGCTCAGGGCCAACAATTCTGAGCCAAGGAAACCGTTTCATTGCTCCGAACAACGACAACGCCAAGGAGATCACTCACAGGGACTACGCCGGACCCGATGTGTGGAAGAATTGGCAGTGGCAATCAGAAATGGACCTTTTCATGAATGGTGCAAAGTTCGTCACTTCAGGCTCACCCATCAAGATGACATACAAAAAGGGTCTCATCATGAAGCCAAGAGATGGAACTCATGTCAGCAGGTTGACACGACATGCTGGTGCCCTAAACTGCTTCGTTGGCAAGCCTTGTTAG 1332 0.5 MERIMVGSATKVAFTLLATFAIVIPCLEAGIAEFDDFLKAQADEAHKIALDSYVPEPHDVAHELNFHVHMALENSTRRELRQRKLRGGGKCQASNPIDACWRCNKDWANDRFRLAKCGKGFGRRATGGLGGPIYVVTDNSDDDMVNPKPGTIRHAVTQKGPLWIIFGHSMIISLRQELMISSDKTIDGRGANVQFRGGAGLTIQFVNNVIIHGVRIKDIVPKDGGMIRDSADHYGLRTRSDGDAISIFGSTNIWIDHVSLSNCADGLIDIIQGSTAITISNCHMTKHNDVFLFGASDSYNGDKIMQITVAFNHFGQGLVQRMPRCRWGFVHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDNAKEITHRDYAGPDVWKNWQWQSEMDLFMNGAKFVTSGSPIKMTYKKGLIMKPRDGTHVSRLTRHAGALNCFVGKPC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0445 443 Pfam Pectate lyase 175 360 IPR002022 -
Gso13g0445 443 SMART amb_all 169 366 IPR002022 -
Gso13g0445 443 PANTHER PECTATE LYASE 18-RELATED 9 443 IPR045032 GO:0030570
Gso13g0445 443 PANTHER PECTATE LYASE 9 443 - -
Gso13g0445 443 SUPERFAMILY Pectin lyase-like 95 434 IPR011050 -
Gso13g0445 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Gso13g0445 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Gso13g0445 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Gso13g0445 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Gso13g0445 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Gso13g0445 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Gso13g0445 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Gso13g0445 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Gso13g0445 443 Gene3D - 94 436 IPR012334 -
Gso13g0445 443 Pfam Pectate lyase, N terminus 31 80 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0445 Gso-Chr13 16425600 16428272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0445 14 443 Polysaccharide Lyase AT1G14420 57.942 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0445 K01728 - gmx:100810615 909.827