Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0439 ATGGCTTTCCCTCCTTCTCACACTTTCATGTTCCAAACCCATGAAGATCATGACCCCCACCAGCTCCATCTGCGTTCAACTTCAACATCCCTCAACGCCTTCCCCTCTTTCCCACCTCATCACTTTCAAGGGGGTGGGGCAGGTGCAGGAGGTTTTATGATGAAGCGTTCAATGTCGTTTTCCAGCATAGAGAAGAACAACCACAAGAACAAGTGCGATGAGGTGCACGGTGACGACGAGTTATCGGACGAGGGATCTCAGCTCCTAGGGGAGAAGAAGAAGAGGCTGAGTCAGGAGCAGGTGAAGGGTCTCGAGAAGAGCTTCGAGCTCGGGAACAAGCTCGAGCCCGAGAGGAAAATGCAGCTGGCCAAGGCCCTGGGACTTCAGCCAAGGCAGATCTCCATATGGTTCCAGAACAGAAGAGCTAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAACTGTTTGAAGCTGTTAAGGCTGATAATGACTCCCTCAAGGCTCAGAACCAGAAACTACATGCAGAGTTACAAACTCTAAAAAGTAGGGACTGCAGTGAAACCGGAACAGTAATTAGCCTCAAGAAAGAAACTGAGGGTTCTTGGAGCAATGGCAGCAACAACAGTTCAGAAATCAATTTGGATCTCTCAAGAACACCAGTGATGAATAGTCCTGTGTCTTCTTCTCTGAATGGAAAAACCCTTTTACCAACTTCCCTTAAGCCCACAAGCATAACTCAACTCCTCCAATGCTCATCAAGATCAGATCTCCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGCCTGATCATCAGCAACACCAGTTTCATTAA 876 0.4783 MAFPPSHTFMFQTHEDHDPHQLHLRSTSTSLNAFPSFPPHHFQGGGAGAGGFMMKRSMSFSSIEKNNHKNKCDEVHGDDELSDEGSQLLGEKKKRLSQEQVKGLEKSFELGNKLEPERKMQLAKALGLQPRQISIWFQNRRARWKTKQLEKEYEVLKKLFEAVKADNDSLKAQNQKLHAELQTLKSRDCSETGTVISLKKETEGSWSNGSNNSSEINLDLSRTPVMNSPVSSSLNGKTLLPTSLKPTSITQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWPDHQQHQFH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0439 291 Coils Coil 139 187 - -
Gso13g0439 291 CDD homeodomain 92 148 IPR001356 GO:0003677
Gso13g0439 291 ProSiteProfiles 'Homeobox' domain profile. 91 147 IPR001356 GO:0003677
Gso13g0439 291 Gene3D - 86 155 - -
Gso13g0439 291 SMART HOX_1 90 151 IPR001356 GO:0003677
Gso13g0439 291 Pfam Homeobox associated leucine zipper 147 186 IPR003106 GO:0006355|GO:0043565
Gso13g0439 291 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677
Gso13g0439 291 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677
Gso13g0439 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 291 IPR045224 GO:0003700
Gso13g0439 291 Pfam Homeodomain 92 145 IPR001356 GO:0003677
Gso13g0439 291 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 291 - -
Gso13g0439 291 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Gso13g0439 291 SUPERFAMILY Homeodomain-like 91 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0439 Gso-Chr13 16333510 16336777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0439 1 284 Homeobox Transcription Factor Family AT5G15150 50.166 1.36e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso13g0439 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0439 K09338 - gmx:100790803 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0439 13 16333510 16336777 Gso19g0186 19 2278503 2282121 GST
Gso13g0439 13 16333510 16336777 Gso18g2108 18 54059799 54062613 PCT
Gso13g0439 13 16333510 16336777 Gso9g1964 9 44054786 44057202 PCT
Gso18g2108 18 54059799 54062613 Gso13g0439 13 16333510 16336777 PCT
Gso9g1964 9 44054786 44057202 Gso13g0439 13 16333510 16336777 PCT