Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0438 ATGTCTAGCAGAAGGTCCAGGCAGCAATCTGCATCCACAAGGATCTCCGATGACCAAATCATCGACCTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGCGATAGGCGTTCTGATAAGGTATCAGCATCTAAGGTCCTACAAGAGACCTGTAACTACATCAGAAGCTTACACAGAGAAGTGGATGACCTAAGCGAACGACTGTCTCAGTTGTTGGCCACAATCGATGCTGATAGCCCTGAAGCTGCCATCATTAGGAGCCTAATTAACTAA 276 0.4638 MSSRRSRQQSASTRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLATIDADSPEAAIIRSLIN* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0438 91 Coils Coil 55 75 - -
Gso13g0438 91 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Gso13g0438 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Gso13g0438 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 78 IPR036638 GO:0046983
Gso13g0438 91 Gene3D - 2 83 IPR036638 GO:0046983
Gso13g0438 91 CDD bHLH_AtPRE_like 9 75 - -
Gso13g0438 91 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Gso13g0438 91 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0438 Gso-Chr13 16307594 16310227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0438 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.250 7.64e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso13g0438 HLH 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0438 - - gmx:100794486 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0438 13 16307594 16310227 Gso19g0188 19 2323308 2326161 GST
Gso13g0438 13 16307594 16310227 Gso18g2111 18 54098341 54100704 PCT
Gso13g0438 13 16307594 16310227 Gso9g1961 9 44017889 44020287 PCT
Gso18g2111 18 54098341 54100704 Gso13g0438 13 16307594 16310227 PCT
Gso9g1961 9 44017889 44020287 Gso13g0438 13 16307594 16310227 PCT