Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0433 ATGGAGAGGAATGAGATGGAAAGGATTGATGATGTGATGCCAGGATTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGATTTTTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTTCCTATTGAACTCATTAAGCAAGTGGATATTTACAAATATGATCCATGGGATCTTCCAAAGCTGGCAGGTACTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGACAGAAAATACAGGAACAGTGCACGTCCAAATAGAGTCACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGGCCTATATATTCCTCTGAAGGAAAGTGCATTGGTCTGAAAAAGTCTCTTGTGTTCTATAGAGGCAGAGCTGCCAAGGGGATGAAAACTGACTGGATGATGCATGAGTTTAGGCTTCCATGCATCTCAGACTCATCCCCTCCCAAAAAACTCTCAGACAGAAGCCTCCCTCCAAATGATTCATGGGCAATTTGTAGGATATTCAAGAAAACCAACTCCCTCTCCCTGGCACAGAAAGCCTTATCTCTCCCTTTGATCTCTCAGTTACCTGGAGGCATAGTATCTGACATGTTCACACAAGGTTTAAAATGCCATAACATAGGATCACCAGCCATTCAATTTTGTGGTGACAAGCAAGATGAGTTACACCAAGTCTCCAACAATGCCATCAACAACAACTTCTCAGCCTCTGATATTCCCACTTACAAGCTCATAAACAACAGCACAGTTTCAAAGCCATCACCACAAAGTCCTGTTTCAGATGGAGACCTTGCTGACAACTTCATATTCTACTCATCATGGCCCACCAAGTGCTGCACACTTGATCCCACTTCCATGCTTTCTCCCAACCCTGACTATATAGAATTTGAAGACCCAAACCAACAACACTATAGTGGCTTCTCAATCAATCTACCTCAAGATATGAAACAAAACATGAGCACAGAAACAGGAACAAAAGAACAAGATCATCAGTGGGAAACAACAATTGGGATGAGAACCACTGGATATCCCTTCAGTTTGAGTCCTCCTTATGATGCTTGGAAGGCTTCTTCTGTGGCATGGGAGTCACGTCCTTGCCCTAGTGATATGTCCACTACCTATTCCACCAACAAATGCTACACTTAA 1143 0.4322 MERNEMERIDDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSSPPKKLSDRSLPPNDSWAICRIFKKTNSLSLAQKALSLPLISQLPGGIVSDMFTQGLKCHNIGSPAIQFCGDKQDELHQVSNNAINNNFSASDIPTYKLINNSTVSKPSPQSPVSDGDLADNFIFYSSWPTKCCTLDPTSMLSPNPDYIEFEDPNQQHYSGFSINLPQDMKQNMSTETGTKEQDHQWETTIGMRTTGYPFSLSPPYDAWKASSVAWESRPCPSDMSTTYSTNKCYT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0433 380 SUPERFAMILY NAC domain 11 169 IPR036093 GO:0003677|GO:0006355
Gso13g0433 380 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 2 378 - -
Gso13g0433 380 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 378 - -
Gso13g0433 380 Pfam No apical meristem (NAM) protein 14 138 IPR003441 GO:0003677|GO:0006355
Gso13g0433 380 Gene3D NAC domain 21 174 IPR036093 GO:0003677|GO:0006355
Gso13g0433 380 ProSiteProfiles NAC domain profile. 12 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0433 Gso-Chr13 16191497 16194832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0433 2 174 NAC Transcription Factor Family AT5G39820 72.340 7.08e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso13g0433 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0433 - - gmx:100777630 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0433 13 16191497 16194832 Gso19g0195 19 2451951 2455250 GST