Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso13g0432 | ATGGGAAGGCCACCATGTTGTGATAAAGAAGGTGTAAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATTCAGGAACATGGTCCTAGCAATTGGAAAGCTGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTGAGACCAGGAATCAAAAGGGGTAACTTCACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCAATAGCTGCTTACCTACCACAAAGAACAGATAATGACATAAAAAACTATTGGAACACCTATTTGAAAAAGAAGCTGAACAAATTGGAAGCAGGTTCTGATCAGGGACATAATATTGGGGTTTCAGTTTCTCAGCCAATGTCAAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGATATCCGCATGGCTAAAAGAGCACTTATTGAAGCACTCTCATCAAACAAGGCATCATCATCATCTACCTTGTTATTAGCTGAATCAAATTCAAACCTCTCCAGTGAAAATAGCATCTTCTATAATAGTAACACTAATAAACCCACAGCACAATCTATGTGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGTTGAAAGGGTGGATGAAAAATACACCAAAATTAGCCTCATGTGCTGCCTCAGCTGTGACTCAAAATTCCTTTAACAACTTGGCTGGTGCTGACACTGCTTTTAGTGAAGGAATTACAACAACAAAGGGAAGCACAAGCACTAGTACTGTTGAGTTGTCTGAGACTTTTGACTCCTTGTTTGGTTATGAGTCTTTGGATTATTCTTCAAATTCTGAGTTCTCACCATCTCTTTCTCCCGAGGCTACTCCTTTCCAAGATGAGAGCAAGCCAGATATAACTGCAGATGGAATAGACATGCCTTTCTCTTTGCTTGAGAAATGGCTTCTAGATGATGCTGCTTGTCAAGAGAAACTTGGCTTCTAG | 1002 | 0.4092 | MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPSNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEAGSDQGHNIGVSVSQPMSRGQWERRLQTDIRMAKRALIEALSSNKASSSSTLLLAESNSNLSSENSIFYNSNTNKPTAQSMCYASSADNIARLLKGWMKNTPKLASCAASAVTQNSFNNLAGADTAFSEGITTTKGSTSTSTVELSETFDSLFGYESLDYSSNSEFSPSLSPEATPFQDESKPDITADGIDMPFSLLEKWLLDDAACQEKLGF* | 334 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso13g0432 | 333 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
Gso13g0432 | 333 | Pfam | Myb-like DNA-binding domain | 67 | 112 | IPR001005 | - | |
Gso13g0432 | 333 | CDD | SANT | 69 | 112 | IPR001005 | - | |
Gso13g0432 | 333 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 116 | IPR017930 | - | |
Gso13g0432 | 333 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 331 | - | - | |
Gso13g0432 | 333 | CDD | SANT | 16 | 61 | IPR001005 | - | |
Gso13g0432 | 333 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
Gso13g0432 | 333 | SMART | sant | 66 | 114 | IPR001005 | - | |
Gso13g0432 | 333 | SMART | sant | 13 | 63 | IPR001005 | - | |
Gso13g0432 | 333 | Gene3D | - | 69 | 129 | - | - | |
Gso13g0432 | 333 | PANTHER | TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED | 1 | 331 | - | - | |
Gso13g0432 | 333 | MobiDBLite | consensus disorder prediction | 281 | 296 | - | - | |
Gso13g0432 | 333 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 61 | IPR017930 | - | |
Gso13g0432 | 333 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - | |
Gso13g0432 | 333 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
Gso13g0432 | 333 | MobiDBLite | consensus disorder prediction | 281 | 300 | - | - | |
Gso13g0432 | 333 | Gene3D | - | 7 | 67 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso13g0432 | Gso-Chr13 | 16165716 | 16167567 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso13g0432 | 1 | 333 | MYB Transcription Factor Family | AT5G62470 | 49.189 | 4.30e-105 | 310 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Gso13g0432 | Myb_DNA-binding | 7e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso13g0432 | K09422 | - | gmx:780542 | 629.787 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso13g0432 | 13 | 16165716 | 16167567 | Gso19g0197 | 19 | 2488068 | 2490148 | GST | |
Gso13g0432 | 13 | 16165716 | 16167567 | Gso18g2114 | 18 | 54143076 | 54145246 | PCT | |
Gso13g0432 | 13 | 16165716 | 16167567 | Gso9g1958 | 9 | 43969741 | 43971687 | PCT | |
Gso18g2114 | 18 | 54143076 | 54145246 | Gso13g0432 | 13 | 16165716 | 16167567 | PCT | |
Gso9g1958 | 9 | 43969741 | 43971687 | Gso13g0432 | 13 | 16165716 | 16167567 | PCT |