Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0432 ATGGGAAGGCCACCATGTTGTGATAAAGAAGGTGTAAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATTCAGGAACATGGTCCTAGCAATTGGAAAGCTGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTGAGACCAGGAATCAAAAGGGGTAACTTCACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCAATAGCTGCTTACCTACCACAAAGAACAGATAATGACATAAAAAACTATTGGAACACCTATTTGAAAAAGAAGCTGAACAAATTGGAAGCAGGTTCTGATCAGGGACATAATATTGGGGTTTCAGTTTCTCAGCCAATGTCAAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGATATCCGCATGGCTAAAAGAGCACTTATTGAAGCACTCTCATCAAACAAGGCATCATCATCATCTACCTTGTTATTAGCTGAATCAAATTCAAACCTCTCCAGTGAAAATAGCATCTTCTATAATAGTAACACTAATAAACCCACAGCACAATCTATGTGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGTTGAAAGGGTGGATGAAAAATACACCAAAATTAGCCTCATGTGCTGCCTCAGCTGTGACTCAAAATTCCTTTAACAACTTGGCTGGTGCTGACACTGCTTTTAGTGAAGGAATTACAACAACAAAGGGAAGCACAAGCACTAGTACTGTTGAGTTGTCTGAGACTTTTGACTCCTTGTTTGGTTATGAGTCTTTGGATTATTCTTCAAATTCTGAGTTCTCACCATCTCTTTCTCCCGAGGCTACTCCTTTCCAAGATGAGAGCAAGCCAGATATAACTGCAGATGGAATAGACATGCCTTTCTCTTTGCTTGAGAAATGGCTTCTAGATGATGCTGCTTGTCAAGAGAAACTTGGCTTCTAG 1002 0.4092 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPSNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEAGSDQGHNIGVSVSQPMSRGQWERRLQTDIRMAKRALIEALSSNKASSSSTLLLAESNSNLSSENSIFYNSNTNKPTAQSMCYASSADNIARLLKGWMKNTPKLASCAASAVTQNSFNNLAGADTAFSEGITTTKGSTSTSTVELSETFDSLFGYESLDYSSNSEFSPSLSPEATPFQDESKPDITADGIDMPFSLLEKWLLDDAACQEKLGF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0432 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso13g0432 333 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso13g0432 333 CDD SANT 69 112 IPR001005 -
Gso13g0432 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso13g0432 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 331 - -
Gso13g0432 333 CDD SANT 16 61 IPR001005 -
Gso13g0432 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso13g0432 333 SMART sant 66 114 IPR001005 -
Gso13g0432 333 SMART sant 13 63 IPR001005 -
Gso13g0432 333 Gene3D - 69 129 - -
Gso13g0432 333 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 331 - -
Gso13g0432 333 MobiDBLite consensus disorder prediction 281 296 - -
Gso13g0432 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso13g0432 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso13g0432 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso13g0432 333 MobiDBLite consensus disorder prediction 281 300 - -
Gso13g0432 333 Gene3D - 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0432 Gso-Chr13 16165716 16167567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0432 1 333 MYB Transcription Factor Family AT5G62470 49.189 4.30e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g0432 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0432 K09422 - gmx:780542 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0432 13 16165716 16167567 Gso19g0197 19 2488068 2490148 GST
Gso13g0432 13 16165716 16167567 Gso18g2114 18 54143076 54145246 PCT
Gso13g0432 13 16165716 16167567 Gso9g1958 9 43969741 43971687 PCT
Gso18g2114 18 54143076 54145246 Gso13g0432 13 16165716 16167567 PCT
Gso9g1958 9 43969741 43971687 Gso13g0432 13 16165716 16167567 PCT