Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0431 ATGAGGAAGCGCCAAGTAGTTGTGAGAAGAGAGGAGCCTCAAAGGAGCGCTAGGACGGTGAAATACGGCGAGTGCCAGAAGAATCACGCCGCGAATGTGGGAGGGTATGCTGTTGATGGCTGCAGGGAGTTCATGGCGAGTGGCGCCACCGGAGAAGGAACAAGTGCTGCTCTCACTTGTGCCGCCTGTGGTTGCCACAGGAACTTCCACAAGAGACAGGAAACCGAAGTGGTGAGTGAGTGCTCCTCGCCTACCTCCAATGGAACTTAA 270 0.5556 MRKRQVVVRREEPQRSARTVKYGECQKNHAANVGGYAVDGCREFMASGATGEGTSAALTCAACGCHRNFHKRQETEVVSECSSPTSNGT* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0431 89 Pfam ZF-HD protein dimerisation region 20 74 IPR006456 -
Gso13g0431 89 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 73 IPR006456 -
Gso13g0431 89 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 73 IPR006456 -
Gso13g0431 89 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 83 - -
Gso13g0431 89 PANTHER MINI ZINC FINGER PROTEIN 2 15 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0431 Gso-Chr13 16129544 16130559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0431 1 88 Zinc finger-homeobox gene family AT3G28917 66.000 8.44e-37 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso13g0431 ZF-HD_dimer 4.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0431 - - gmx:100305714 172.94