Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0430 ATGGAGATAATAACACCCACAGCAACCGCCACAAACGCAACCGCAAAATCGCCAGAACCCGACATAGAGACGATGACCCGGATCCATCAAAACCCGAACCCGAATCCAAAGCCGGTGTCTTTCTCCAACGGCGTCTTGAAGCGCCACCATGTAAACCACCGCGCCGCGGTGGTTTACAAGGAATGCCTGAAGAACCACGTGGCGAGCTTGGGTGGCCACGCTTTGGACGGCTGCGGCGAGTTCATGCCGTCGCCGGCGGCCACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCCGCGAACCGGAGGAGTCACCCATTTCTCCGGCGACACATCACGTCCTCGAGTACAGGCCACACCACCGCCACCACCCTCCGCCGCCTCACCGGAGTCCCAACTCCGCCTCCCCGCCGCCGATCTCATCCTACCCCTCGGCGCCCCACATGCTCCTCGCCCTCTCCGGCGGGGCCGGCCTCTCCGTCGCGCCGGAAAACACCGCCGCGCCGGCGCCGCCGCACCACTCGCGTAAACGCTTCCGGACGAAGTTCACCCAAGAACAAAAGGAGAAGATGCACGAGTTCGCGGACAAAGTTGGTTGGAAGATGCAGAGGCGCGACGAGGAAATGGTTATGGAGTTCTGCAACGAGATTGGTGTCGACAGAGGAGTTCTCAAAGTGTGGATGCACAACAACAAGAACACTTTCGCGAAAAAAGACAACCTTAACGGCAACAGTATCGGTAACGTTGCCATTGTCAGTGCCAACGGAGTTGCTCCCATTGGCGCCGTTGGCAGCGCTACCGTTAGAAGCAGCGTTCATGTCCACGAACATGAACACGGAGGAATTAACGGTAACGGTAGCGGCGACAACAACCACAACCCCCTCGGTTCCCGGGATGTGAACGAGTACGAGAATGATAGTGGGACTAACGGCGGCGGCGGTACTAATGGGTCTTCTTCTTCTTCTTGA 996 0.5934 MEIITPTATATNATAKSPEPDIETMTRIHQNPNPNPKPVSFSNGVLKRHHVNHRAAVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEESPISPATHHVLEYRPHHRHHPPPPHRSPNSASPPPISSYPSAPHMLLALSGGAGLSVAPENTAAPAPPHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQRRDEEMVMEFCNEIGVDRGVLKVWMHNNKNTFAKKDNLNGNSIGNVAIVSANGVAPIGAVGSATVRSSVHVHEHEHGGINGNGSGDNNHNPLGSRDVNEYENDSGTNGGGGTNGSSSSS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0430 331 MobiDBLite consensus disorder prediction 293 331 - -
Gso13g0430 331 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Gso13g0430 331 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 5 278 - -
Gso13g0430 331 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 5 278 - -
Gso13g0430 331 Gene3D - 172 246 - -
Gso13g0430 331 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Gso13g0430 331 MobiDBLite consensus disorder prediction 138 153 - -
Gso13g0430 331 MobiDBLite consensus disorder prediction 127 156 - -
Gso13g0430 331 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Gso13g0430 331 SUPERFAMILY Homeodomain-like 175 246 IPR009057 -
Gso13g0430 331 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 185 242 IPR006455 -
Gso13g0430 331 MobiDBLite consensus disorder prediction 278 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0430 Gso-Chr13 16106839 16108453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0430 1 241 ZF-HD Transcription Factor Family AT5G15210 52.569 1.25e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso13g0430 ZF-HD_dimer 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0430 - - gmx:100814730 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0430 13 16106839 16108453 Gso19g0199 19 2541489 2543122 GST
Gso13g0430 13 16106839 16108453 Gso18g2115 18 54176516 54178158 PCT
Gso13g0430 13 16106839 16108453 Gso9g1957 9 43936106 43937725 PCT
Gso18g2115 18 54176516 54178158 Gso13g0430 13 16106839 16108453 PCT
Gso9g1957 9 43936106 43937725 Gso13g0430 13 16106839 16108453 PCT