Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0426 ATGTTGGTGGCAAAAGACTCAACGATGATGAAGCTCTTCGGGAATACGATCCCGGCACCGGAGATCCCCGCCGGAGCTCCGGCATTTTCTTCTGGTGATGTTTTTGGTGACAGTGTTGGTCAGAACCGTGGTTCTTCAAGTGTCAATGGGGATGGTGAAGAACACGAGATTCAGCAGGACATAATGGGAGAGGAAACAACTGAGAGTAAGAAGGAAGATGAAGTGACCAATCTTGATACTGTCTCAAGATCAGGGGAAGGGTCTATTAACCCCTCTACCGAGAAGGAGGATCTTACATTGAAAACTTCAAAAAAGACTGAGCAAGAACAAGGTGAAAATTCACAAAATAAAACACTGAGAAAGCCGGACAAAATACTGCCTTGCCCCCGCTGCAATAGCATGGACACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGTCATTTCTGCAAGAATTGCATGAGATACTGGACTGCTGGTGGAGTGATGAGGAATGTTCCTGTGGGTGCTGGTCGCAGAAAGAACAAGAATTTTGCTTCGCAGTATCGTCATATAACTGTTCCTGAAGCAGCACTCTCGAGTTCCCAGCCGGACTTGTCAAATGGAGTCAGTAATCCTTCCTTGAACTGTAATGCCACACTCCTTGCATATGGGTCTGATAGACCCTTGTGTGAATCAATGACATCTGTTTTGAACCTTGCTGATAAAGCAGTGAACAATTCCACAACAAATGGATTTAATGGCTCTGAAGAACTAGAAATTCCTGTTACTTATGTTGGTGGAGAGAAAGTGAATGATGATTCCAATAAATCTTCTGACACGTCAACGAAGCCAACGAAAGGTGAAACCACCAATAGGTCCCAAGAACAAGTCATAGAGAATTGTCATCCCTTCCCACCTCATGTTCCCTACTTTCCTGGTGCCCCTTGGCCTTTCCCTTGGAATCCAGCACCGTGGAACTCCCTGGTACCATTACCACCTCCTTTTTTCCCACAAGGATTTACCATGCCTCTCTATCCTGCAGCAGCTTATTGGAGTCTTACTATACCGGGTGCACGGAGCATCCCATGGCTAGCGCAACCATCATTACTGAATACTACAGTGTCTAACTCTGGTCCTAACTCACTAACCTTGGGCAAACATTCAAGGGAAGAAAACATGCATAAATCAAATGGGGTAGCAGTTGAGGATGAACATAGCAAGGAAAATAATAAAGAAAAGTGTCTATGGGTTCCGAAAACATTGAGGATTGATGACCTAGGAGAAGCAGCAAAAACCTCTATATGGACAACACTAGGTATTAAAAATAATAAAGCAGACTTATTTCCTGGGGGAGGACTCTTCAAATCACTCCCATCACAGGGTGGTGAAAAAAATCGTGTAATAAAAAACTCACCTGTCCCTCATGCCAATCCAGCAGCACTCTCTAGGTCAATTAACTTTCAGGAGACCTCATAA 1467 0.4424 MLVAKDSTMMKLFGNTIPAPEIPAGAPAFSSGDVFGDSVGQNRGSSSVNGDGEEHEIQQDIMGEETTESKKEDEVTNLDTVSRSGEGSINPSTEKEDLTLKTSKKTEQEQGENSQNKTLRKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCMRYWTAGGVMRNVPVGAGRRKNKNFASQYRHITVPEAALSSSQPDLSNGVSNPSLNCNATLLAYGSDRPLCESMTSVLNLADKAVNNSTTNGFNGSEELEIPVTYVGGEKVNDDSNKSSDTSTKPTKGETTNRSQEQVIENCHPFPPHVPYFPGAPWPFPWNPAPWNSLVPLPPPFFPQGFTMPLYPAAAYWSLTIPGARSIPWLAQPSLLNTTVSNSGPNSLTLGKHSREENMHKSNGVAVEDEHSKENNKEKCLWVPKTLRIDDLGEAAKTSIWTTLGIKNNKADLFPGGGLFKSLPSQGGEKNRVIKNSPVPHANPAALSRSINFQETS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0426 488 MobiDBLite consensus disorder prediction 80 96 - -
Gso13g0426 488 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 487 - -
Gso13g0426 488 ProSitePatterns Zinc finger Dof-type signature. 128 164 IPR003851 GO:0003677|GO:0006355
Gso13g0426 488 ProSiteProfiles Zinc finger Dof-type profile. 126 180 IPR003851 GO:0003677|GO:0006355
Gso13g0426 488 PANTHER CYCLIC DOF FACTOR 2 1 487 IPR045174 GO:0003700|GO:0006355
Gso13g0426 488 MobiDBLite consensus disorder prediction 274 292 - -
Gso13g0426 488 MobiDBLite consensus disorder prediction 49 79 - -
Gso13g0426 488 Pfam Dof domain, zinc finger 123 180 IPR003851 GO:0003677|GO:0006355
Gso13g0426 488 MobiDBLite consensus disorder prediction 97 119 - -
Gso13g0426 488 MobiDBLite consensus disorder prediction 264 292 - -
Gso13g0426 488 MobiDBLite consensus disorder prediction 28 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0426 Gso-Chr13 16027637 16030965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0426 10 488 C2C2-Dof Transcription Factor Family AT5G39660 42.188 1.32e-92 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gso13g0426 zf-Dof 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0426 - - gmx:100775675 962.214