Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0421 ATGCAAGCAATGGAGAACATTCATCAGAGGGAAATATTGGAAGAGCAAAGGTTTGAATTGCCACCAGGATTCAGGTTTCATCCAACAGATGAAGAACTCATCACTCACTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGTGCCAGAGCCATTGGAGAGGCTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGGATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACTAATAGGGCCACTGGTGTTGGCTACTGGAAGGCAACAGGCAAGGACAGAGAGATATATAAGGCAAAGGCACTGATTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCTCCAAGTGGTGAAAAAACTAGCTGGGTCATGCATGAATACAGATTAGAAGATGAACATTCTGTGCACAATCCACCCAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTTCAGAAGAGTAATGGTGGGAAGAAAATGCCAATTTCTGGGTTGGTGAGATTCAGCAATTTTGCAAAGGACATGCCTTCATTGATGGATTCTTCTCCATACAACGACAGTGAATCAAAACCTGTTTTGGGGGAGTCATCACAGCCAACATGCTTCTCTGATCCAAACCAAAGTGAGGACCAAAGGACACAAGATGAAAACATAGCGGATAGCTATGAAACTCTCATGTTGGCATCTTCATATTCTTCAAACCCCTCTGATATTTCCCCTGCCTCATGGACTTTTTCTAAATCTGCCCCTACCGTGTCCCACCAATCACTCCAAGTTGGGAATTCACACAGCTCAGATTACTTCATGCTTCATCAGGAACAGTCCATGTTGGGGATGTTGATTGAAAACCATGGAGCAAGTGCTGGCCAAAGAACTCAGAAAGCTCAGGATAATAAAGGCTCTGATGCTGACATGTCCTCTGTGATGTACAACAACTATGAAATGTTCCAAAGATCATTTGGGAACCAGGAATATTCATCACCTTCCGTAGGACATGTGTATTCTAGTGGCCTATGGGGATTTTAA 1077 0.4336 MQAMENIHQREILEEQRFELPPGFRFHPTDEELITHYLSQKVLDSCFCARAIGEADLNKCEPWDLPWMAKMGEKEWYFFCVRDRKYPTGQRTNRATGVGYWKATGKDREIYKAKALIGMKKTLVFYKGRAPSGEKTSWVMHEYRLEDEHSVHNPPKKAMNDWAICRIFQKSNGGKKMPISGLVRFSNFAKDMPSLMDSSPYNDSESKPVLGESSQPTCFSDPNQSEDQRTQDENIADSYETLMLASSYSSNPSDISPASWTFSKSAPTVSHQSLQVGNSHSSDYFMLHQEQSMLGMLIENHGASAGQRTQKAQDNKGSDADMSSVMYNNYEMFQRSFGNQEYSSPSVGHVYSSGLWGF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0421 358 Gene3D NAC domain 29 174 IPR036093 GO:0003677|GO:0006355
Gso13g0421 358 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Gso13g0421 358 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Gso13g0421 358 MobiDBLite consensus disorder prediction 196 231 - -
Gso13g0421 358 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 14 316 - -
Gso13g0421 358 MobiDBLite consensus disorder prediction 197 225 - -
Gso13g0421 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 316 - -
Gso13g0421 358 SUPERFAMILY NAC domain 16 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0421 Gso-Chr13 15969441 15971559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0421 19 358 NAC Transcription Factor Family AT5G07680 51.603 5.09e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso13g0421 NAM 4.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0421 - - gmx:100781383 738.413