Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0420 ATGGGACGATCACCATGTTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCTGAGGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAGAGTTGCAGACTAAGATGGACCAATTATCTCAGGCCTGACATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAGAACTATTGGAATACGCATCTTAAGAAAAGGTTAACCAAAATGGGAATTGACCCTGTGACACACAAGCCTAAAAACGATGCACTTCTCTCTAGTGACGGCCAATCCAAAACCGCTGCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCAAGACTTGTAAGAGAGTCAAAAATACGTTCACATTCACTTCAGCAACAATTTGGAAGTAGTTCTTCTACATTTGCATCTTCTTCTTCTGCATCAACTTCAGCTTCAGCTCTCAATAATAATAGTAATAATAAGCCGGAAGCACCCCCGCCACCGCCACCGCCGCCACCACCGTCGCCACCACCGTCGCGATCTTCTCTTGATGTTCTGAAGGCTTGGAATAGTGGAGGGTGGCTAAAATCTAATGAAGGAAGCGGTGCCATTGCAAGCAATGTTGGGGTAAGTGGGGACCTTGAGTCTCCTACTTCTACACTATCTTTCTCTGAGAATGCACCACCAATTATGAATGGAATTAGAGGAGAAAATAACAACAACAACAACAATGATAGTGCAATGCCTATGATTGAGTTTGTGAGGATTTCAGGCAATTCTTCTTCTCTTGTGAAAGAAGAAGGTGAGCAAGAGTGGAAAGGTACTTATGATAGTTCCATCACTACTTTTAGTTCTAGTCTGCATGAGTTCACTATGAACATGGAAGGCACGTGGGCCTCTGAGTCCCTTAGGACTAGTGGCTCACATGATGATGACATTGTTGAAGAAGGCTTCACCAATCTTTTGCTTAAAACAAACTCTGAGGACCCAAATTTATCATCGGAGGGTGGGGGACAGTCTAACAATGACGATGGTGGCGATGGAAGCAATAATGATTTTTATGAAGATAACAATAATTATTGGAACAGCATTCTCAACTTAGTGAATTCTTCCCCTTCTCATCCCCCTATGTTCTAA 1269 0.4429 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKIRSHSLQQQFGSSSSTFASSSSASTSASALNNNSNNKPEAPPPPPPPPPPSPPPSRSSLDVLKAWNSGGWLKSNEGSGAIASNVGVSGDLESPTSTLSFSENAPPIMNGIRGENNNNNNNDSAMPMIEFVRISGNSSSLVKEEGEQEWKGTYDSSITTFSSSLHEFTMNMEGTWASESLRTSGSHDDDIVEEGFTNLLLKTNSEDPNLSSEGGGQSNNDDGGDGSNNDFYEDNNNYWNSILNLVNSSPSHPPMF* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0420 422 CDD SANT 69 112 IPR001005 -
Gso13g0420 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso13g0420 422 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso13g0420 422 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso13g0420 422 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso13g0420 422 CDD SANT 16 61 IPR001005 -
Gso13g0420 422 Gene3D - 69 116 - -
Gso13g0420 422 MobiDBLite consensus disorder prediction 171 204 - -
Gso13g0420 422 MobiDBLite consensus disorder prediction 119 147 - -
Gso13g0420 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso13g0420 422 MobiDBLite consensus disorder prediction 171 229 - -
Gso13g0420 422 SMART sant 66 114 IPR001005 -
Gso13g0420 422 SMART sant 13 63 IPR001005 -
Gso13g0420 422 MobiDBLite consensus disorder prediction 369 398 - -
Gso13g0420 422 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso13g0420 422 MobiDBLite consensus disorder prediction 132 147 - -
Gso13g0420 422 PANTHER TRANSCRIPTION FACTOR MYB106 1 415 - -
Gso13g0420 422 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso13g0420 422 Gene3D - 13 66 - -
Gso13g0420 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 415 - -
Gso13g0420 422 MobiDBLite consensus disorder prediction 205 224 - -
Gso13g0420 422 MobiDBLite consensus disorder prediction 256 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0420 Gso-Chr13 15937991 15941183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0420 1 417 MYB Transcription Factor Family AT3G01140 53.461 1.08e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g0420 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0420 K09422 - gmx:100787446 746.117