Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0413 ATGGCAGCTCTTGTAATAACTGTGTCACAAGATGGAACCGGACAGTACAGGACGGTGCAGGAAGCCATAGATGCTGTGCCACTCGGCAACACTCGCCGGACGGTGATTAGGGTGTCCCCGGGAACCTACCGGCAGCCCCTCTACGTGGCAAAGACTAAGAACTTCATCACCCTCGTTGGTCTGCGCCCCGAGGACACTGTTCTCACTTGGAACAACACTGCCACCTCAATCCACCACCACCAGGGTGCAGGGCAAGCAGTAGCAGTTAGAGTAACAGTAGATCGTTGTGCTTTCTATAATTGCAGGTTCCTTGGATGGCAGGACACACTATATTTACATTATGGAATACAATATTTGAAAGATTGTTATATTGAAGGAAGTGTGGACTTCATATTTGGCAATAGTACTGCACTCTTGGAACATTGTCACATCCATTGCAAGTCCGCAGGGTTCATAACTGCTCAAAGCAGAAACTCTCCACAGGAAAAAACTGGTTATGTATTCCTCAGATGTGTTGTCACAGGTAATGGGGGAACTTCATATGCATATCTTGGAAGACCATGGAGACCTTTCGCAAGAGTGGTCTTTGCATTCACTTACATGGATCAATGTATAAAGCCTGCTGGCTGGAATAATTGGGGGAAAATTGAGAATGAAAAAACTGCTTGCTTCTATGAATACAGGTGTTTTGGACCTGGTTGGTGTCCATCCCAACGAGTAAAATGGGCTAGAGAATTACAAGCTGAAGCAGCAGAGCAGTTTCTCATGCATAGCTTCATTGACCCAGAATCAGAGAGACCTTGGCTTGCTCAAAGAATGGCTCTGAAGATTCCATATTCTGCTTAA 846 0.4586 MAALVITVSQDGTGQYRTVQEAIDAVPLGNTRRTVIRVSPGTYRQPLYVAKTKNFITLVGLRPEDTVLTWNNTATSIHHHQGAGQAVAVRVTVDRCAFYNCRFLGWQDTLYLHYGIQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRNSPQEKTGYVFLRCVVTGNGGTSYAYLGRPWRPFARVVFAFTYMDQCIKPAGWNNWGKIENEKTACFYEYRCFGPGWCPSQRVKWARELQAEAAEQFLMHSFIDPESERPWLAQRMALKIPYSA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0413 281 Pfam Pectinesterase 83 261 IPR000070 GO:0030599|GO:0042545
Gso13g0413 281 Pfam Pectinesterase 6 72 IPR000070 GO:0030599|GO:0042545
Gso13g0413 281 ProSitePatterns Pectinesterase signature 2. 124 133 IPR033131 -
Gso13g0413 281 PANTHER PECTINESTERASE 1 79 - -
Gso13g0413 281 PANTHER PECTINESTERASE 81 280 - -
Gso13g0413 281 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 79 - -
Gso13g0413 281 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 81 280 - -
Gso13g0413 281 SUPERFAMILY Pectin lyase-like 2 268 IPR011050 -
Gso13g0413 281 Gene3D - 2 77 IPR012334 -
Gso13g0413 281 Gene3D - 78 275 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0413 Gso-Chr13 15828202 15832087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0413 5 274 Carbohydrate Esterase AT5G47500 36.570 6.49e-63 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0413 K01051 - gmx:100810259 579.326