Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0407 ATGGCAAGGAAGAGAAAGGTTGCTGAAGTCGTGGAAGAGAGAGACCTATGTGAGGGAACCTTGGGTTGGGATGAGATGATGAAACAAGCTGCAGCACTTGGAGGAGTGCAAAGAGCCAGGAAGAGGTTTGTTGGTGTAAGGCAAAGGCCATCAGGTAGATGGGTGGCTGAGATCAAAGACACCATTCAGAAGATAAGAGTGTGGCTGGGAACTTTTGACACTGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGCTTGCTTCGTGGCACCAACACAAGGACTAACTTCTGGCCTTGTTCTCAATCCTCCACAAGTCCAGCTCTTTCCTCAAAGATCACCAATCTCCTCCTTCAAAGGCTTAAAGAAAGGAACAACAACAACACTTGTTCCTCGTCCTCGTCCTCCTCCACTTCACTTCTCATCAACCACCAACAAATGCATCAGCAAGTTGGTGCATATGGAGAAGGTTCAACACAATTCTCAATTGACCAATTCACTGATTTCCTCAATGACCCTGAAGATTATAGCACAAGCAATAATGACTTCATCAACAACAGTGCACAAATTGACTACATTACTAGTAGCTTTGAATCATGCTTAACTGAAAAAGATGGTGGGACTAAAATTGATATGCAATACAAATCCAGGAATGTGACACCACAGACTTCAAGCAATGACAGCAATTCAGGAGTTGAGGATAGTGAAGAAGAAGGCTCTGATTTGGGTGTGCAAAGCACTAATTTGGATGTTCATGATTTTAAGTTTTTGGACAACATTGCTCCACCTAGTTACTACTCTCCCTTTGAGATGGCTGAAGAGATGGAGGAGGAGCCTGTGGAGCCTGAGAATGAGAACTATGGCGATGAGCCTTCAATGCTTAGAGCTGTGATGAAGAGAATGACTTATGAGAGGAAGTTCTCAGCTTCTCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGGGAACATGAAGGGAAGAGGACTAGCTGATCAATTAACAAGCCTTCAAATGGCTTGTAGCAAAAACATACTCGAGAAGAACAAGGAGGAGAAAGAATACATTGGAACAATGGATAGGAGACAGGAAGAAGAACACCAACAAACATCACCTGACATGGATTCTTCAAGTGTTGATGGGGAACTGTTGCTTTGGAATTCACTTGATCTTCCTCCTATTTGCTTTGTTAACTTGCTAGAAAACGGTTCATTCAATTAG 1239 0.4318 MARKRKVAEVVEERDLCEGTLGWDEMMKQAAALGGVQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGTNTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNNNTCSSSSSSSTSLLINHQQMHQQVGAYGEGSTQFSIDQFTDFLNDPEDYSTSNNDFINNSAQIDYITSSFESCLTEKDGGTKIDMQYKSRNVTPQTSSNDSNSGVEDSEEEGSDLGVQSTNLDVHDFKFLDNIAPPSYYSPFEMAEEMEEEPVEPENENYGDEPSMLRAVMKRMTYERKFSASLYAFNGIPECLKLKLESGNMKGRGLADQLTSLQMACSKNILEKNKEEKEYIGTMDRRQEEEHQQTSPDMDSSSVDGELLLWNSLDLPPICFVNLLENGSFN* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0407 412 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 347 - -
Gso13g0407 412 MobiDBLite consensus disorder prediction 213 244 - -
Gso13g0407 412 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Gso13g0407 412 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Gso13g0407 412 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Gso13g0407 412 MobiDBLite consensus disorder prediction 365 384 - -
Gso13g0407 412 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Gso13g0407 412 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Gso13g0407 412 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 347 - -
Gso13g0407 412 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Gso13g0407 412 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Gso13g0407 412 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Gso13g0407 412 MobiDBLite consensus disorder prediction 214 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0407 Gso-Chr13 15774113 15775614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0407 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.43e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso13g0407 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0407 K09286 - gmx:100786711 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0407 13 15774113 15775614 Gso19g0227 19 3284317 3285899 GST