Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0405 ATGGGTTGCATAAGCTCCAAGAATGCGGTTGCCAGAACTTGTTCTCCGTCGCCCGCAGTACTCGACATTGCAGAGCCGAACCCCGCTTATGCCAAGGGCCATTCCTGGTTGACGGTTTTGGAATCCAAAACGGGTTCAGAGGATGAGAGGAGCAATAGCAAGTTCAGGAAGAACAGTTCAAAGAAGAGTAGTGGGTCTTTCAGCTTCAGGCATGTGGAGGCTGAACAGAATGCTGCTGGTTGGCCCCCTTGGCTCATAGCTACTGCAGCAGAAGCCATTCAAGGATGGATCCCTCTCAAAGCTGATTCTTTTCAAAAGTTGGAAAAGATTGGAGAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAGAAGGTGCGCTTTGACAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATCCTCCGCAGGCTTGATCACCCAAACATCATGAAATTGGAAGGCATAATCACTTCTCGCCTATCAAACAGCATATACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGTCCTGATATTGTGTTCTCCGAATCACAGATAAAATGTTACATGAGGCAACTATTAAGTGGACTTGAGCATTGTCATATGCGTGGCATCATGCATAGAGACATCAAATTATCAAATATCTTGTTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCACAAATAGCAAGCATCATTTGACAAGTCGCGTAGTGACTTTGTGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAACTATGGAGTGTCAGTGGATCTGTGGAGTGTGGGCTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGACTAAGCTTCCTCATGCAACAATGTTTAAACCTCAGACTAATTATGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCTGCATCTGCTGTAAATCTACTCGAGACTTTATTGTCGATTGATCCAGGCAACCGAGGGACTGCCTCATCTGCCCTAATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATGCATCAAGCCTGCCAAAGTATCCACCTAGCAAAGAAATGGATGCCAAAAGTATGGGAGATTCATCCAGGAAAAAGACTGGAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGGCAGCAAAGACGGGTCAGTAAAATTTTGCAAGATCCAAACAATTTCGGCAAATCAATTTCAAAAGAGGACACGCAGAACATTTCTGAAAATGCTCGTAGAGATGATGGTAAAGCACATCTTACAAAGGGAAAAGGAGGGGCCATGCACAAAGATTATACAAAGTCTCATTTGGATGCTATGTCTGAGACCTCCCAAATGAATGTTGCTAATGGTAATGGCTATAGTGTGGGATCTAATAATACCTTTACATGGGTAAAAAGGAGAAAACAAGATGCATCTTCAACTCTATCAGATGGATCAAGAAGCAAAATTAGTGCACTGGATCCAAACTTTGCAAAACGCACATATGACTTAACCACACTCAGGGTGTCCATGGATTTAGATCCTGAAGAACTGATGAATGCTCAGGGTGACAGAGGGCGTGCTGTTCGTAAATCAAGATTTGGAAGAGACAACAGATGA 1764 0.432 MGCISSKNAVARTCSPSPAVLDIAEPNPAYAKGHSWLTVLESKTGSEDERSNSKFRKNSSKKSSGSFSFRHVEAEQNAAGWPPWLIATAAEAIQGWIPLKADSFQKLEKIGEGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFSESQIKCYMRQLLSGLEHCHMRGIMHRDIKLSNILLNNEGVLKIGDFGLANTISTNSKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPASAVNLLETLLSIDPGNRGTASSALMSEYFSTKPYACNASSLPKYPPSKEMDAKSMGDSSRKKTGGKMREVATSRRQQRRVSKILQDPNNFGKSISKEDTQNISENARRDDGKAHLTKGKGGAMHKDYTKSHLDAMSETSQMNVANGNGYSVGSNNTFTWVKRRKQDASSTLSDGSRSKISALDPNFAKRTYDLTTLRVSMDLDPEELMNAQGDRGRAVRKSRFGRDNR* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0405 587 CDD STKc_CDK9_like 104 388 - -
Gso13g0405 587 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Gso13g0405 587 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0405 587 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0405 587 MobiDBLite consensus disorder prediction 42 66 - -
Gso13g0405 587 MobiDBLite consensus disorder prediction 441 459 - -
Gso13g0405 587 MobiDBLite consensus disorder prediction 562 587 - -
Gso13g0405 587 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0405 587 MobiDBLite consensus disorder prediction 460 483 - -
Gso13g0405 587 PANTHER CYCLIN-DEPENDENT KINASE 1 582 - -
Gso13g0405 587 MobiDBLite consensus disorder prediction 412 440 - -
Gso13g0405 587 PANTHER CELL DIVISION PROTEIN KINASE 1 582 - -
Gso13g0405 587 MobiDBLite consensus disorder prediction 399 483 - -
Gso13g0405 587 SUPERFAMILY Protein kinase-like (PK-like) 98 393 IPR011009 -
Gso13g0405 587 Gene3D Transferase(Phosphotransferase) domain 1 187 427 - -
Gso13g0405 587 Gene3D Phosphorylase Kinase; domain 1 91 186 - -
Gso13g0405 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Gso13g0405 587 MobiDBLite consensus disorder prediction 566 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0405 Gso-Chr13 15743247 15749272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0405 96 428 Core Cell Cycle Gene Families AT5G10270 47.564 6.70e-109 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso13g0405 Pkinase 1.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0405 - - gmx:100787268 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0405 13 15743247 15749272 Gso19g0229 19 3291527 3297931 GST