Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0398 ATGGCGGCGGCAAAACCCCAACGCACTCCACAGGAAGTGGAGGACATCATCATCCGCAAAATCTTCCTCGTCTCGATCACCGAAATCGCCAACAGCAACACCACCACCAATTCGAAAATCGTGTATCTGGAACTGACCGCCGCCGAGATTCTCAGCGAGGGCAAAGAGCTCCGCCTCTCGCGCGATTGCATGGAGAGGGTTTTAATTGACCGTCTCTCCGGCGAATTCGCCGGCGCCGGAGACGAGTCTCCGTTCCAGTACCTCGTCGGCTGCTACCACCGCGCGCACGAGGAGGGGAAGAAAATCTCGAACATGAAGGACAAGAACTTGCGGTCGGAGATGGAGACGGTGGTGAGGCAGGCCAAGAAGCTCTGCGTCAACTACTGCCGGATTCATTTAGCAAATCCCGAGCTCTTCCCGAGCCGGGGTTCGGCGAGTACCGGCGCCAATTCGCCGCTGCTGCTGCTGATTTTCGCGGAGGTAGGCGGCGGGAATGTGTTTGGTGGCGGCGGCGGCGGAGGTGCAAAGAGTCCGCCGGGGTTTCTGGAGGAGTTTTTCAGGGACCCTGATTTTGACAGCTTGGACAAGATTCTGAAGGGTTTATATGAGGAGCTGAGAGGGAGTGTGATGAAGGTGTCTGCTCTTGGGAACTTTCAGGACTCATTAAGGGCTTTGTTGTATTTGGTTAGGTTTCCAATTGGTGCCAAGTCACTTGTGAATCATGAGTGGTGGATTCCCAAAGGGGTTTATGTGAATGGCCGTGCTATTGAGATGACCAGCATTTTGGGTCCCTTTTTTCATATCAGTGCTCTTCCTGATCAAGCTTTTTTCAAGGGGCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCAGCTGATTTGTTATCTTCATTTTCCACTATCAAAACTGTCATGAACAACTTATATGATGGCCTAGCTGAAGTACTCCTCATCCTCCTTAAAAGTCAAGATACTCGTGAAAATGTACTCAAGTATCTTGCGGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCGTGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTGCACTACTCAAACCGCTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTATTGAATGGCTTAATAGTAAAAACCCAGCTAAGACTGGGGCAACCAATCAATATAATGATGATCAGAAACGCTTGCAACAATCCCAAGAGGCCAGTAGCTCTGGTAGTAATGCTGATGAGCTCTCAAATGAAAATTCTGCACGTGCTGAAAAGACGAAATATTCATTTATTTGCGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGGTGTGAAGATGCTCTCTCCACACTTAAAGCCATGCAGGAGCGAACACCCACTCCTCAGGCAGAATTGGATATAAATCGACTTGAGAAAGAAATGGAATTGTACTCACAGGAAAAACTATGTTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAAAATGCGCTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTGGGTGGATTAAAGATGCCTCTACCACCAACTTGCCCAATGGAATTTTCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAATTTATGAACTTCATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATACCTGAGAGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCCCGTAGGAGCGGCTCAACTGCTACAGCCACCCTATTTGAAGGTCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGATAAGTTTAACATCCGCCATAATATTGCCGAACTCCTCGAATACTTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAGGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTTTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACAGTTGAGTGGGAGAGACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTCAGCATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCTCAAAGAAAATCGCTTAGTCTGAAGGATCCTGAGAAGTATGAATTTCGTCCAAAGCATTTGCTAAAACAGATTGTGCACATATATGTTCATCTAGCCAGGGGTGACACGAATTCCATCTTCCCAGCTGCCATCTCAAAGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGGGGCTGATGTTCTTCACAGAATTGGCGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGCGCAAAAGCTAAAGTTGCTGCTTCAGAGGCCATGGATACTGAAGCCACTCTAGGGGAGATACCAGATGAATTCCTTGATCCAATTCAATACACATTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGATCCATTCAACCGTTCTCATCTTACCGCGGATATGTTGATTCCCGACGATGAGCTAAAAGCAAGAATTGAGGAGTTTGTCAGGTCTCAGGAAATGAAGAAACACTTAAGCCTACAGAGCACCAAGGCCACAATTCAGACTACAAATGGGGAAACAATGTTGATTGATTAG 3117 0.4475 MAAAKPQRTPQEVEDIIIRKIFLVSITEIANSNTTTNSKIVYLELTAAEILSEGKELRLSRDCMERVLIDRLSGEFAGAGDESPFQYLVGCYHRAHEEGKKISNMKDKNLRSEMETVVRQAKKLCVNYCRIHLANPELFPSRGSASTGANSPLLLLIFAEVGGGNVFGGGGGGGAKSPPGFLEEFFRDPDFDSLDKILKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPIGAKSLVNHEWWIPKGVYVNGRAIEMTSILGPFFHISALPDQAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSQDTRENVLKYLAEVININASRAHIQVDPITCASSGMFVNLSAVVLRLCEPFLDANLTKRDKIDAKYVHYSNRLKLSGLTALHASSEEVIEWLNSKNPAKTGATNQYNDDQKRLQQSQEASSSGSNADELSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQERTPTPQAELDINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGLKMPLPPTCPMEFSTMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISKDGRSYNDQLFSAGADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDDELKARIEEFVRSQEMKKHLSLQSTKATIQTTNGETMLID* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0398 1038 ProSiteProfiles U-box domain profile. 941 1015 IPR003613 GO:0004842|GO:0016567
Gso13g0398 1038 SUPERFAMILY RING/U-box 934 1013 - -
Gso13g0398 1038 PANTHER UBIQUITINATION FACTOR E4 1 1018 IPR045132 GO:0000151|GO:0030433|GO:0034450
Gso13g0398 1038 PANTHER - 1 1018 - -
Gso13g0398 1038 SMART Ubox_2 945 1008 IPR003613 GO:0004842|GO:0016567
Gso13g0398 1038 Coils Coil 520 547 - -
Gso13g0398 1038 MobiDBLite consensus disorder prediction 427 459 - -
Gso13g0398 1038 MobiDBLite consensus disorder prediction 427 458 - -
Gso13g0398 1038 CDD RING-Ubox_UBE4A 944 1012 - -
Gso13g0398 1038 Pfam Ubiquitin elongating factor core 262 925 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Gso13g0398 1038 Pfam U-box domain 942 1013 IPR003613 GO:0004842|GO:0016567
Gso13g0398 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 941 1020 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0398 Gso-Chr13 15640362 15649907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0398 1 1038 U-box Gene Family AT5G15400 75.238 0.0 1615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0398 K10597 - gmx:100806175 2020.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0398 13 15640362 15649907 Gso19g0237 19 3405984 3414281 GST