Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0392 ATGACTTCCTCACACAACAAGCATCCCTTGCCCACTGCCGTTCACTTCTTTAAGATAATCCTCAGAACAAGTCTTGCACATGGAATACTTAAGCTCCCAAAAGATTTTACTACAAAATATGGAGATAGCATGTCAAACCTGGTGTTTCTCAACCCTCCAGATGGCATTGAATGGAAAATATGTTGGACCAAGCTTGATGGCAAGATTTGGTTTGAAAAGGGTTGGAAGGAGTATGCCACATACTATTCCCTGGATCATGGCCACTTGCTGTTGTTTCAATATCAGGGAACTTCTCATTTTGACGTGCACATATTCGACAACAGCGCCGTTGAAGTAGACTATCCTTCTTCCCCTGGTACTCGTGATGGAAAGGAAAGACATGTGGAGATTAGTGATGATTCTGTTGAAATTTTGGATGCTCAATTTTCATGCCAGAAGACTAGAGTGAAATCCACAGTGCCATCTCCTCAACCTTCTAAGGAAATGAAATTCGGCCCAACTACAAATGTTGAAAGAAGCCCCAGGGTAAACTTGCATCAGCATGTCCAAACTGGAAAAGAAGAGGGTAAAGGAATTTTTAACACTGAATGCCCAAAAGTGGAGCAGTTAACTTCTACCACTCTAAAGAAAGCCACAACTTTCAGGCTTGTCATGAAGCCATCCTTCATTAATGGAGAGTACCTGAAATTTGCGTCAGAAAATAATTTGAATGTGGGGGATGTTTGTGTTTTTGAGCTGATCCAGAGCTTTGCTTTCAAGGTTCAGAGGGACCAAGTTTCCCCATTTCACAAGCCTATACAACTCGAATGGGAACGATTCCAAAACGAGGTGAAAGAGGACATTCTGAAACGCAATTTAGGCACAAAAAATACCGAAAAAGGTTAA 885 0.4158 MTSSHNKHPLPTAVHFFKIILRTSLAHGILKLPKDFTTKYGDSMSNLVFLNPPDGIEWKICWTKLDGKIWFEKGWKEYATYYSLDHGHLLLFQYQGTSHFDVHIFDNSAVEVDYPSSPGTRDGKERHVEISDDSVEILDAQFSCQKTRVKSTVPSPQPSKEMKFGPTTNVERSPRVNLHQHVQTGKEEGKGIFNTECPKVEQLTSTTLKKATTFRLVMKPSFINGEYLKFASENNLNVGDVCVFELIQSFAFKVQRDQVSPFHKPIQLEWERFQNEVKEDILKRNLGTKNTEKG* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0392 294 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 229 254 - -
Gso13g0392 294 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 227 - -
Gso13g0392 294 SMART B3_2 16 108 IPR003340 GO:0003677
Gso13g0392 294 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Gso13g0392 294 PANTHER B3 DOMAIN-CONTAINING 229 254 - -
Gso13g0392 294 PANTHER B3 DOMAIN-CONTAINING 11 227 - -
Gso13g0392 294 CDD B3_DNA 15 106 IPR003340 GO:0003677
Gso13g0392 294 Pfam B3 DNA binding domain 23 107 IPR003340 GO:0003677
Gso13g0392 294 SUPERFAMILY DNA-binding pseudobarrel domain 223 255 IPR015300 -
Gso13g0392 294 SUPERFAMILY DNA-binding pseudobarrel domain 13 108 IPR015300 -
Gso13g0392 294 MobiDBLite consensus disorder prediction 149 171 - -
Gso13g0392 294 Gene3D - 11 109 IPR015300 -
Gso13g0392 294 Gene3D - 199 258 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0392 Gso-Chr13 15574618 15576467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0392 8 139 B3 DNA Binding Superfamily AT1G49475 37.324 2.44e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso13g0392 B3 2.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0392 - - gmx:100779965 611.298