Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0385 ATGGCAACCGCGAGGACCGTGAAGGATGTTTCGCCTCACGATTTCGTGAAGGCTTACGCCTCCCATCTCAAGCGTTCCGGCAAGATGGAGCTTCCTGAGTGGACTGATATTGTAAAAACAGCAAAATTTAAGGAATTGGCTCCATATGATCCTGACTGGTATTATGTTAGGGCTGCCTCAATGGCAAGAAAGATTTATTTGAGAGGCGGTCTTGGTGTTGGGGCTTTCCAGAGGATCTATGGTGGAAGCAAGAGAAATGGAAGCCGTCCCCCACATTTCTGCAAGAGCAGTGGGGCTATTGCAAGACACATTCTGCAACAATTGCAAAACATGAGCATTGTTGAGATTGATACAAAAGGAGGTAGGAAAATCACATCTAGTGGTCGAAGGGATCTTGATCAAGTTGCTGGGCGAATTGTGGTTGCTGCCTGA 432 0.4699 MATARTVKDVSPHDFVKAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMSIVEIDTKGGRKITSSGRRDLDQVAGRIVVAA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0385 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Gso13g0385 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
Gso13g0385 143 PANTHER 40S RIBOSOMAL PROTEIN S19-1-RELATED 3 141 - -
Gso13g0385 143 Gene3D - 1 142 IPR036388 -
Gso13g0385 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Gso13g0385 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Gso13g0385 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0385 Gso-Chr13 15500484 15502351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0385 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 87.943 2.71e-94 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0385 K02966 - gmx:100805469 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0385 13 15500484 15502351 Gso19g0251 19 3586136 3588370 GST