Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0358 ATGACGTTCCTCAGTATCACCTTCTTAACACTATTCTTCCTTCTTCTCTTTCTCTCCATAGAGCTCCAAGCGTACACCCCAGAAGACAACTTCACCATCAGTTGTGGCACCACCGGGATAGTCTTCGACGGCCAAAGGACATGGACGGGGGACGCAGACACAAAGTACTTATCTGGTGGTCAAGGCAGCACCGTTTTAACCCAAGCAGCAACACAAGATCCTTCTGTCAATCAAGTTCCCTACACCACAGCACGGTTATCCCCTTCTCAGTTCAATTACTCCTTCCCCGTTTCTGCGGGCCCCAAATTCGTTCGCCTCTTCTTCTACCCTGCTGATTACCCTTCCTTTCCCCGCACTCATGCCTCTTTCTCCGTTCAATCTAACGGATTCACCTTCTTAAAAGGTTTCAACGCCTCTCTAAACGCTGACGCGGAAGCCACCAAAACCATCTTCAGGGAATATGTGGTCAACGTCAACGACGGTGAGATTCTCATCCTCAGCTTCACTCCCTCGCAACCAAACTCCTACGCTTTCATCAATGGAATCGAGATACTTTCCATGCCAAGTGATTTGTATTACACGTCAGCAACTGACTCAACAGGATTCAAGTTCTTGGGAAGTACCACGCTGTACAGCGTAGAAACCAGATTTGCGCTGCAGGCGGAGTATAGAATCAAAATGGGAGGGCAAGAAATATCACCACTAAACGACACCGGTTTGTTCAGGAAATGGGCCGGTGACGAAGAAGATTATTTAATCAAACAAAATCCACAGAATAATGATCTTCCAGCTGACACGGATGGTAAGATGAACATAACCGTGAATCCTGATTACGTGGCACCCAAGGAACTCTACAGAACAGCGCGTAGCATGGGCACAAACGCCACTCTGAACAAAATCAGCAACCTGACTTGGGAGTTCCCGGTTGATTCTGGCTTCACTTACGTTCTCAGGCTCCACTTTTGCGAGCTTGACCCCAATATTAATAAAGATGGTGACAGGGTGTTCTTCATTTACATAGCGAGCCAGTTGGCTGAGAACCACGCTGATGTTATGCAATGGAGCCACCATCAGAAAGGTCTCGCTGTGCAGAGAAACTATGCCGTTTTAATTCCGAAGGACAACACTCAGAAAAAGGTTAATCTCTCGCTTCGGATGGATCCTTATGCAACTAATGATAAAACGACATACAGCGACGCGTTCTTGAACGGTCTCGAGATCTTCAAAATCAGTGAGGCTGGGTCAAACAACCTTGCCGGACCTAACCCGGACCCGGTTCAGACTCCACACAACAACATACCCGCCCCAAAGGGAAACCGCAGCAGCAAAAGCGGAACGACGTCGATAATCGGCATCGTGGCAGGTGTGGTATCCGGCGTCGTTTTGATCTCACTCATCATCCTTTTCCTCATCGTCTTCTTCCGACGCAAGACAATCACTACGCCCAAGGACTACAACAAGTCCAAGTCCTCCGCGACCTCCAAGTGGGGCCCACTCTCCTTCACAACGACCAAGTCAACCACCACCACGAAGTCCTCCCTCCCCTCCGAACTCTGTCGTAACTTTTCCCTCGCCGAGATCGAAGCCGCCACCAACAACTTCGACGATGTTCTCATCATTGGCGTCGGGGGATTCGGCCACGTGTACAAGGGCTACATCGACGGCGGTTTCACCCCAGTCGCCATCAAGCGCCTCAAACCGGATTCACAGCAGGGTGCAAATGAATTCACGAATGAGATCGAGATGCTCTCACAGCTACGCCACCTTCATCTCGTGTCCCTCATTGGGTACTGCAACGAGAACTACGAAATGATCCTCGTCTACGATTTCATGGCACGTGGCACCCTCCGGCAACATCTCTACAACTCTGATAACCCTCCTGTGTCGTGGAAGCAGCGCTTGCAAATTTGCATTGGTGCCGCACGTGGGCTGCATTATCTCCACACAGGCGGGAAGCACACAATCATCCACCGTGACGTGAAAACCACCAACATACTGTTGGATGACAAGTGGGTGGCCAAGATTTCCGACTTTGGGCTATCCAGAATTGGTCCCACGAGCATTGACAAATCTCATGTAAGCACTGTTGTGAAGGGCAGTTTTGGGTATTTAGACCCAGAATACTATAAACGGTACCGTTTGACGGAGAAGTCTGACGTTTACTCTTTCGGTGTAGTGCTCTTTGAGATGTTGTGCGCTCGGCCACCTCTAATCCATACTGCGGAGATGCAACAAGTGTCACTTGCTAATTGGGTCAGACATTGTTACCAAAGTGGGACCATGACACAGATTGTGGACCCCACGTTGAAGGGAAGGATCACGCCTGAGTGCTTCAATAAGTTTTGCGAGATTGGGATGAGTTGTTTGTTAGAGGATGCGACGCAGAGGCCATCGATGAACGACGTTGTTGGGATGCTAGAGTTTGCGTTGCAGCTGCAGGAGAGCGTGGAAAATGAAAAAGGAGAGGAAATTAGCTGCGATACATTTACAAGTGAGTTGAGTGTGACTACGACTTCGACTATCGAAGACCATAGCTATCATTATAAGGATAGTTATAATACGTTGCTGTCTTGGAATCCTTTCTCTGAAATTACAGACCAAAATCCGCGTTGA 2613 0.4899 MTFLSITFLTLFFLLLFLSIELQAYTPEDNFTISCGTTGIVFDGQRTWTGDADTKYLSGGQGSTVLTQAATQDPSVNQVPYTTARLSPSQFNYSFPVSAGPKFVRLFFYPADYPSFPRTHASFSVQSNGFTFLKGFNASLNADAEATKTIFREYVVNVNDGEILILSFTPSQPNSYAFINGIEILSMPSDLYYTSATDSTGFKFLGSTTLYSVETRFALQAEYRIKMGGQEISPLNDTGLFRKWAGDEEDYLIKQNPQNNDLPADTDGKMNITVNPDYVAPKELYRTARSMGTNATLNKISNLTWEFPVDSGFTYVLRLHFCELDPNINKDGDRVFFIYIASQLAENHADVMQWSHHQKGLAVQRNYAVLIPKDNTQKKVNLSLRMDPYATNDKTTYSDAFLNGLEIFKISEAGSNNLAGPNPDPVQTPHNNIPAPKGNRSSKSGTTSIIGIVAGVVSGVVLISLIILFLIVFFRRKTITTPKDYNKSKSSATSKWGPLSFTTTKSTTTTKSSLPSELCRNFSLAEIEAATNNFDDVLIIGVGGFGHVYKGYIDGGFTPVAIKRLKPDSQQGANEFTNEIEMLSQLRHLHLVSLIGYCNENYEMILVYDFMARGTLRQHLYNSDNPPVSWKQRLQICIGAARGLHYLHTGGKHTIIHRDVKTTNILLDDKWVAKISDFGLSRIGPTSIDKSHVSTVVKGSFGYLDPEYYKRYRLTEKSDVYSFGVVLFEMLCARPPLIHTAEMQQVSLANWVRHCYQSGTMTQIVDPTLKGRITPECFNKFCEIGMSCLLEDATQRPSMNDVVGMLEFALQLQESVENEKGEEISCDTFTSELSVTTTSTIEDHSYHYKDSYNTLLSWNPFSEITDQNPR* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0358 870 CDD STKc_IRAK 540 807 - -
Gso13g0358 870 MobiDBLite consensus disorder prediction 418 444 - -
Gso13g0358 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Gso13g0358 870 Pfam Protein tyrosine and serine/threonine kinase 540 805 IPR001245 GO:0004672|GO:0006468
Gso13g0358 870 SUPERFAMILY Protein kinase-like (PK-like) 509 809 IPR011009 -
Gso13g0358 870 Pfam Malectin-like domain 33 410 IPR024788 -
Gso13g0358 870 SMART serkin_6 534 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0358 870 Gene3D Phosphorylase Kinase; domain 1 497 610 - -
Gso13g0358 870 Gene3D Transferase(Phosphotransferase) domain 1 611 833 - -
Gso13g0358 870 ProSitePatterns Protein kinases ATP-binding region signature. 540 563 IPR017441 GO:0005524
Gso13g0358 870 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 16 819 - -
Gso13g0358 870 PANTHER OS07G0166700 PROTEIN 16 819 IPR045272 GO:0004714|GO:0006468
Gso13g0358 870 Gene3D - 219 411 - -
Gso13g0358 870 Gene3D - 30 188 - -
Gso13g0358 870 ProSiteProfiles Protein kinase domain profile. 534 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0358 Gso-Chr13 15106433 15109171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0358 20 833 Receptor kinase-like Gene Family AT3G51550 51.856 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso13g0358 Malectin_like 1.2e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0358 - - gmx:100799780 1648.64