Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0355 ATGCTTTTCCGTTTCAGCTTCCCCTTCACGATCCGATCCTTCTTCATATCCCCTCCATGCATTCTGCTTTTCGTTCTCTTCTCTTTCACGTGCTTCAATTCCACAGAAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAACAATATCGTCATATCTCAGCGCCTGGGTGGTCATTAGGATGGACATGGGCAAAGAAGGAGGTAATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAATATAAGGCAAACATCCCACATTGCTGTAAAAAGAACCCTATAGTTGTTGATTTACTTCCCGGAACACCTTACAACCAACAAATTTCAAACTGCTGCAAAGGTGGTGTACTCAGCTCGTGGGCACAGGACCAATCCAAGGCGGTTGCAGCATTTCAAGTCAGTGTAGGTAGTGCCAGTACCACTAACAAAACTGTCAAAGTGCCAAAAGATTTCACACTGAAAGCGCCAGGACCCGGTTACACGTGTGGGCCGGCAACAATTGTGAAACCAACTCAATTTTTACAACCAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTTGCTCAGAGAACACCCAGTTGCTGTGTCTCGCTCTCATCTTTCTATAACAATACAGTTGTACCCTGCACTACATGTGCATGTGGCTGCCAGGGCAACTCATCTCAATCAGGAGAATGTGTAGATCCAGATTCACCACATTTGCAATCAGTTGTTTCCAACGCTGGACCTGGAAAGAGTAGTATCACACCTTTGGTTCGATGCACTCGTCATATGTGCCCAATCCGAGTTCACTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTGTTACTAATTTTAATTACGGGATGAATTATTCTGATTGGAACTTGGTTGTTCAACATCCAAACTTTGACAATCTGACCCAACTTTTCAGTTTCAACTACAAAGCAATAACTCCCTACGGGTCAATAAATGATACAGCAATGCTTTGGGGACTTAAGTTCTACAATGATTTTCTCATGCAAGCTGGCCCTCTTGGTAATGTACAATCAGAGCTACTATTCAGAAAGGATAAATCAACCTTCACTTTTGACAAGGGTTGGGCCTTCCCTCGGAGAGTCTATTTCAATGGCGACGTTTGTGTGATGTCGCCACCTGATGCTTATCCATGGTTACCTAATGCGGGTTCCAGGCAAGTGGTTTCCCTGCTTGCTTTGGTGATGTCCTCTTTGGTAGCCTTGGTATTATATGCAGATACTTAA 1377 0.4379 MLFRFSFPFTIRSFFISPPCILLFVLFSFTCFNSTEAYDPLDPNGNITIKWDIISWTPDGYVAVVTMYNFQQYRHISAPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKYKANIPHCCKKNPIVVDLLPGTPYNQQISNCCKGGVLSSWAQDQSKAVAAFQVSVGSASTTNKTVKVPKDFTLKAPGPGYTCGPATIVKPTQFLQPDKRRVTQALMTWNVTCTYSQFLAQRTPSCCVSLSSFYNNTVVPCTTCACGCQGNSSQSGECVDPDSPHLQSVVSNAGPGKSSITPLVRCTRHMCPIRVHWHVKLNYKEYWRVKVTVTNFNYGMNYSDWNLVVQHPNFDNLTQLFSFNYKAITPYGSINDTAMLWGLKFYNDFLMQAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRVYFNGDVCVMSPPDAYPWLPNAGSRQVVSLLALVMSSLVALVLYADT* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0355 458 PANTHER PROTEIN COBRA 16 457 IPR006918 GO:0010215|GO:0031225
Gso13g0355 458 PIRSF COBRA 11 457 IPR006918 GO:0010215|GO:0031225
Gso13g0355 458 PANTHER COBRA-LIKE PROTEIN 16 457 - -
Gso13g0355 458 Pfam COBRA-like protein 61 224 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0355 Gso-Chr13 15061140 15065536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0355 21 457 COBRA Gene Family AT3G02210 73.059 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0355 - - gmx:100804568 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0355 13 15061140 15065536 Gso19g0293 19 4333131 4337770 GST
Gso13g0355 13 15061140 15065536 Gso18g2222 18 55188434 55192528 PCT
Gso18g2223 18 55198206 55202053 Gso13g0355 13 15061140 15065536 PCT
Gso8g2053 8 21851738 21855475 Gso13g0355 13 15061140 15065536 PCT