Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0348 ATGGGGAGGGGAAGAGTGGAGCTCAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCTACCCGCGGCAAGCTTTATGAATTCTGTAGCACCAACAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAGCAAACCTGGCAAAGAGCTTGAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAAAGGAACCTTCTTGGTGAAGACTTGGGCCCACTAAATACCAAAGATCTTGAGCAGCTTGAGCGGCAACTGGATTCATCTCTCAAGCAAGTGAGGTCCACAAAGACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGGAGCATATGTTGGTAGAAGCAAACAGATCTTTGACCATGAAGCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGAGCAAAGTATGTCATATGGTACACAAAATGCTCACTCCCAAGGCTTTTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGTTCTGACTACAGGTACAACCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACAACTCAAGCTCAACAAGTCAATGGATTTATTCCTGGATGGATGCTTTGA 747 0.4565 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTNSMLKTLERYQKCSYGAVEVSKPGKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLEEINSRNQYRQTWEAGEQSMSYGTQNAHSQGFFQPLECNPTLQIGSDYRYNPEASEQQLAATTQAQQVNGFIPGWML* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0348 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso13g0348 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso13g0348 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso13g0348 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gso13g0348 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 235 - -
Gso13g0348 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso13g0348 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso13g0348 248 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso13g0348 248 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gso13g0348 248 PANTHER MADS BOX PROTEIN 1 235 - -
Gso13g0348 248 Coils Coil 124 144 - -
Gso13g0348 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso13g0348 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso13g0348 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso13g0348 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0348 Gso-Chr13 14958204 14964121 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0348 1 248 MADS-box Gene Family AT5G15800 71.756 1.62e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso13g0348 K-box 9.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0348 K09264 - gmx:100785322 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0348 13 14958204 14964121 Gso19g0303 19 4523330 4529738 GST
Gso13g0348 13 14958204 14964121 Gso18g2238 18 55311800 55317831 PCT
Gso13g0348 13 14958204 14964121 Gso8g2061 8 22011937 22017546 PCT
Gso18g2238 18 55311800 55317831 Gso13g0348 13 14958204 14964121 PCT
Gso8g2061 8 22011937 22017546 Gso13g0348 13 14958204 14964121 PCT