Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso13g0343 | ATGGGTTCTGTTTGTTGTTGTTTGAGTTTTGATGATTTTGAAGATTATGTAAATCCAAATAGTCCTGTATATAGGAACTGTGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGATTGTGTATTCTTCAATATTCCGTAGAGGGGATGCACATTCAATTCCTTCATCTATTCAAGGGGCAGCATCTATAACTTCAGCAGCATCACTCGATAATTCTCTATCTGACATGTATCGCTCTCCTCCAAGGCCATTACCATATGATGCAGAACCCAGATATTTCCGCTCGCAACGTGATGGACTAGTTTCAAGGCGTGAGAAGGGTTCAAGTCATTCAAATGAGGAAACAGAACCTCTAAGAAGTAATGCAGATGTGGATCCAGAATCCTTAAATTCAGGAGACAAATGGAAGGAAAGTGCCTGTGAAGCTGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAGACTTCAATCAACAAAATATTCAACTGGAGTTGGTCTTGTCTATGCATCATCAGAGGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCTGTCTGTGGAAAGGTGATGGTATTCGATGAAACGACTTTCACTTGA | 690 | 0.4014 | MGSVCCCLSFDDFEDYVNPNSPVYRNCVCLSCLIQNLLIVYSSIFRRGDAHSIPSSIQGAASITSAASLDNSLSDMYRSPPRPLPYDAEPRYFRSQRDGLVSRREKGSSHSNEETEPLRSNADVDPESLNSGDKWKESACEAGSKEYRSKSSLRLQSTKYSTGVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETTFT* | 230 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso13g0343 | 229 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
| Gso13g0343 | 229 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 226 | - | - | |
| Gso13g0343 | 229 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
| Gso13g0343 | 229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 224 | IPR013083 | - | |
| Gso13g0343 | 229 | MobiDBLite | consensus disorder prediction | 99 | 121 | - | - | |
| Gso13g0343 | 229 | Pfam | RING-H2 zinc finger domain | 172 | 217 | IPR024766 | GO:0008270 | |
| Gso13g0343 | 229 | SUPERFAMILY | RING/U-box | 172 | 224 | - | - | |
| Gso13g0343 | 229 | MobiDBLite | consensus disorder prediction | 99 | 136 | - | - | |
| Gso13g0343 | 229 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 226 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso13g0343 | Gso-Chr13 | 14884359 | 14890474 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso13g0343 | 1 | 226 | C3H Transcription Factor Family | AT5G15790 | 61.905 | 7.63e-96 | 278 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso13g0343 | - | - | gmx:100790104 | 479.559 |