Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0332 ATGTCTAATCATCATCGTTCCTCCAATCCCTTCTCATCTACTCACTCTGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAGACTCGCTCTCGCCTCTGCTCCTGCGACGACGACACTGACATAAACCCCTTCTCTGACGTCGTTTGCGACCTCCATCGCACGGACCATATGTTAGGGTTAGGGTTAGGGTTTGGCGTTGAAATTGATCCCGAAAGCCAAACAAATGATCGTGATAATCATCGTGGTGATAGGGTTTTGGAAGCTGATAGAGTTTTCAATTTCACGGTGGGGGATGGTTCGGGTGGGCTTAGGGTTGTAGGGTTTGGCTCGGAATCCGAATCGAGTAGCGAGGAGGGTGGGATTCGTGATGGTGGCGGGTTTGATGATTTCGATGTTCGGTTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACGCTGAACGAGGGGTTTGAGTGGGAGGAGGTGGAGGAGAGGGTGAATGAGAGAGAGGATTTGGGTTTGGTGGTTGATGAGGTTGAAATTGAAAGTGATGATGGTGATGGGAATTCGGTGGCGTCGGGTTTTACAAATGCCGTTGAGGAGGAGGATGCCGGGGAAGAGGCACTGAGGTACCTCGAATGGGAGATCCTCTTGGCGGTTAACAATTTGGAGAGGAATGTGAATGATGTGTTGGAGCACGAGGGCAATGCTGTTGGTGGTGCTGATTTGTTAACAATTCAGGATGGTTATGTGTACGCAGCCGAGTATGATGTTTTGTTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGGAGCCCTCCGGCCTCGAAGAGTGTTGTGGAGAGTCTCCCGTTGGTGGAGTTGTCCAAGGAGGAGTTGTTGCAGGGGAAGAACGTGGCATGTGCCATTTGCAAGGATGAGGTTTTGTTGGAGGAGAAGGTGAGAAGGCTGCCTTGCTCCCATTGTTATCATGGGGACTGCATTTTGCCGTGGTTGGACATTCGCAACACGTGCCCAGTTTGCCGGTTTGAGCTACCCACTGATGATCCGGACTATGAGCAGGGGAAGGTCCAGAGGGCAGCACATGGTCTGTTGGAGCTTGCGGCAGCACGGATGCAATTTTGA 1125 0.5138 MSNHHRSSNPFSSTHSDSDSDSVSCFVTDLFETRSRLCSCDDDTDINPFSDVVCDLHRTDHMLGLGLGFGVEIDPESQTNDRDNHRGDRVLEADRVFNFTVGDGSGGLRVVGFGSESESSSEEGGIRDGGGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNEREDLGLVVDEVEIESDDGDGNSVASGFTNAVEEEDAGEEALRYLEWEILLAVNNLERNVNDVLEHEGNAVGGADLLTIQDGYVYAAEYDVLFGQFLENESALKGSPPASKSVVESLPLVELSKEELLQGKNVACAICKDEVLLEEKVRRLPCSHCYHGDCILPWLDIRNTCPVCRFELPTDDPDYEQGKVQRAAHGLLELAAARMQF* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0332 374 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 3 374 - -
Gso13g0332 374 Pfam Ring finger domain 301 342 IPR001841 -
Gso13g0332 374 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Gso13g0332 374 CDD RING-H2_RNF126_like 301 342 - -
Gso13g0332 374 SMART ring_2 301 341 IPR001841 -
Gso13g0332 374 MobiDBLite consensus disorder prediction 1 22 - -
Gso13g0332 374 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 374 - -
Gso13g0332 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 348 IPR013083 -
Gso13g0332 374 SUPERFAMILY RING/U-box 288 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0332 Gso-Chr13 14718936 14724283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0332 213 364 C3H Transcription Factor Family AT3G02340 50.000 6.17e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0332 - - gmx:100812037 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0332 13 14718936 14724283 Gso19g0333 19 5344967 5346688 GST