Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0331 ATGCAAACCAAGGAAGTAGTCTCAAGCCTCAGTTACTTACTCCCTTCAAACCCTTGTTCCTACCCTCCTAGCAACAACTACACCTCCATGATCCAAAACAGCATTCCCACATTTCAGTTCCAAAGATTCTCTAACCAAATATATGGCTACAACAACAGCCACAACACTACCTATCAAGTTCCTGACTTCAGTCCTCAATCCTCATGCATCAGCAGCAACTCCACTTCTGATGAGGCTGATGACCAAAACCTAAGCCTCATCAACGAGAGGAAGCACAGGAGAATGTTATCGAACCGCGAATCGGCGCGTAGGTCACGCATGAGGAAGCAGAAGCACCTTGATGAGCTCTGGTCACAAGTGGTGTGGCTCAGGAATGAGAACCACCAGCTCATAGACAAGCTGAACCATGTCTCAGAGACCCATGACCAAGTGCTCCAAGAGAATTCTCAGCTCAAAGAAGAAGCCTCGGAACTTCGCCAAATGATTAGGGACATGCAGATACACAGTCCTTGCGGTGGCCCAAACTCCTTCATAACCCCTTTGGAAGATCATGATGTTGATCATGTGCCTTCAGCATATCTCAGATCTGATGATTCTTCAAACCAATTCAATTCGTGTAACAACAACATGGACCTCCTTGGCTGA 645 0.4667 MQTKEVVSSLSYLLPSNPCSYPPSNNYTSMIQNSIPTFQFQRFSNQIYGYNNSHNTTYQVPDFSPQSSCISSNSTSDEADDQNLSLINERKHRRMLSNRESARRSRMRKQKHLDELWSQVVWLRNENHQLIDKLNHVSETHDQVLQENSQLKEEASELRQMIRDMQIHSPCGGPNSFITPLEDHDVDHVPSAYLRSDDSSNQFNSCNNNMDLLG* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0331 214 Coils Coil 134 168 - -
Gso13g0331 214 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 200 IPR044521 -
Gso13g0331 214 SUPERFAMILY Leucine zipper domain 90 140 IPR046347 GO:0003700|GO:0006355
Gso13g0331 214 CDD bZIP_plant_GBF1 91 142 IPR045314 GO:0003700|GO:0006355
Gso13g0331 214 Gene3D - 88 143 - -
Gso13g0331 214 MobiDBLite consensus disorder prediction 194 214 - -
Gso13g0331 214 MobiDBLite consensus disorder prediction 191 214 - -
Gso13g0331 214 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 88 151 IPR004827 GO:0003700|GO:0006355
Gso13g0331 214 PANTHER BZIP TRANSCRIPTION FACTOR 1 200 - -
Gso13g0331 214 SMART brlzneu 86 150 IPR004827 GO:0003700|GO:0006355
Gso13g0331 214 Pfam bZIP transcription factor 90 148 IPR004827 GO:0003700|GO:0006355
Gso13g0331 214 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 93 108 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0331 Gso-Chr13 14704089 14705071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0331 58 182 bZIP Transcription Factor Family AT3G30530 67.188 5.11e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso13g0331 bZIP_1 5.7e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0331 - - gmx:100527640 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0331 13 14704089 14705071 Gso19g0334 19 5382727 5383760 GST
Gso13g0331 13 14704089 14705071 Gso18g2273 18 55617526 55618480 PCT
Gso13g0331 13 14704089 14705071 Gso8g2094 8 22596510 22597415 PCT
Gso18g2273 18 55617526 55618480 Gso13g0331 13 14704089 14705071 PCT
Gso8g2094 8 22596510 22597415 Gso13g0331 13 14704089 14705071 PCT