Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0328 ATGAGGAAACCTTATATGATGGGAAAAGACAAAATGAACAACAACATTAAGAGCAAGCTAAGGAAGGGATTGTGGTCACCTGAGGAAGATGAAAAACTCCTAAGGTACATGATCACTAAGGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGCCTTCAAAGGTACGGCAAGAGTTGCCGGCTTCGTTGGATTAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTGCACTCTATTCTTGGCAACAGATGGTCTCAGATTGCGGCACGTCTCCCTGGTCGCACAGACAATGAGATCAAGAATTTCTGGAACTCCACTCTGAAGAAAAGGTTGAAAATGAACAACAATATTAACGCCACTTCATCACCAAACAACAGCTACTCATCATCAGAGCCTAGAGATGTCAATGTCATGGGTGGGATCATGCCCATGAACGAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATGCATGCAATCCATGCATACAACCAACATGGTACTAACTGACCAATTTGATCCCTTTCCCTTGTTGTCCAACAACCGTTACGACATGACCGGCGCAACCGATTTCCTTGACAACATGGCTGCATGCTTAACCCAAGTTGGCATGGTAGATCATGATCATGGGGTTTTTCATGATGGTTATGGGACATTGGAGCCTAACAAAACGGGTTTAGAAAGTGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGACGACAATAGTAGTACCCCAATTGATCATGTGAAAAGCCATAACAACAACAACCACTTCAAGAATAGTTGCTTCAATAACACTGATCATCACCATCATATCCAATGCTCCAACAACGTAGTTGTAGAGGATTTGTTTGGGTTTGGAAATCATGGACATGGAGAAAGCTTTAGAATGGAAGAATGGGACTTTGAGGGTTTGATTCAAGATATTCCCTATTTTTCTTCCCTTGATTTCCAAGTTTAA 1026 0.4279 MRKPYMMGKDKMNNNIKSKLRKGLWSPEEDEKLLRYMITKGQGCWSDIARNAGLQRYGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKMNNNINATSSPNNSYSSSEPRDVNVMGGIMPMNEHDLMTMCMDSSSSTSSSCMQSMHTTNMVLTDQFDPFPLLSNNRYDMTGATDFLDNMAACLTQVGMVDHDHGVFHDGYGTLEPNKTGLESDFSLPPLESRSIDDNSSTPIDHVKSHNNNNHFKNSCFNNTDHHHHIQCSNNVVVEDLFGFGNHGHGESFRMEEWDFEGLIQDIPYFSSLDFQV* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0328 341 CDD SANT 77 120 IPR001005 -
Gso13g0328 341 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Gso13g0328 341 SMART sant 21 71 IPR001005 -
Gso13g0328 341 SMART sant 74 122 IPR001005 -
Gso13g0328 341 Gene3D - 76 148 - -
Gso13g0328 341 CDD SANT 25 69 IPR001005 -
Gso13g0328 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Gso13g0328 341 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Gso13g0328 341 MobiDBLite consensus disorder prediction 244 273 - -
Gso13g0328 341 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Gso13g0328 341 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Gso13g0328 341 PANTHER TRANSCRIPTION FACTOR MYB83 1 341 - -
Gso13g0328 341 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Gso13g0328 341 PANTHER MYB DOMAIN PROTEIN 55 1 341 - -
Gso13g0328 341 Gene3D - 19 75 - -
Gso13g0328 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0328 Gso-Chr13 14660447 14664340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0328 1 341 MYB Transcription Factor Family AT3G08500 47.011 1.37e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g0328 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0328 K09422 - gmx:100813660 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0328 13 14660447 14664340 Gso19g0336 19 5416272 5420284 GST