Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0327 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCACTGGCACCTGGTCACATGTCTGCGACACGTGCCGGTCAGCGCCATGCGTACTGTACTGCCATGCAGACTCAGCATACCTTTGCTCATCCTGCGATGCTCGTGTCCATGCGGCTAACCGTGTGGCCTCAAGACACGAGCGTGTGTGGGTGTGCGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTATGCAAAGCCGACGCAGCTTCTCTTTGTTCTTCCTGTGATGCTGACATTCACTCAGCAAACCCTCTCGCTAGCCGCCACCACCGCGTGCCCATTCTCCCGATCTCTGGTTCCCTCTTCGGGGAACCAGAGCATGAACGCGTGTACGCGTTCGTGAATGAAGTGGAAGCGGAGGAGGAAGAGGAAGAGGTTTTTGATGAGTATGATGAGGTTGAAGCAGCTTCGTGGTTGTTGCCACATCCTATGAAAAATGATAAAATTGACGAGAATGGTGGTGATGAGGGTTTTTTGTTTGGTGATGAGTATTTCGACAACCTTGTTGATTGTAACTCATGTGGTCACAATAACAACCAGTTTAGCAACGTTTATGATCAGCACCAGCAGAATTACAGCAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCCGCAGCATTTTCAACCGGGTTTGGACTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCGATGGATGTTGGTGTTGTACTCGAATCAACAATAAGTGACATCTCAATGTCCCACTCAAAGTCGCCAATAGGGACAACTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTCACACCAATGGACAGAGAGGCAAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGAAAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGTCGTTTTGCAAAGAGAACCGATGTAGAAGCTGAAGTGGACCAGATGTTCTCCACAACACTATTCACTGAAGTTGGAGGTAGCATTTTTCCCACTTTCTAG 1086 0.4853 MLKEGTNNVGGSTGTWSHVCDTCRSAPCVLYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGSLFGEPEHERVYAFVNEVEAEEEEEEVFDEYDEVEAASWLLPHPMKNDKIDENGGDEGFLFGDEYFDNLVDCNSCGHNNNQFSNVYDQHQQNYSNTVPQNYAVVPVQVPQHFQPGLDFDSSKAGFSYDGSLSQSVSVSSMDVGVVLESTISDISMSHSKSPIGTTDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLFTEVGGSIFPTF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0327 361 ProSiteProfiles CCT domain profile. 292 334 IPR010402 GO:0005515
Gso13g0327 361 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Gso13g0327 361 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Gso13g0327 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 361 IPR045281 GO:0009909
Gso13g0327 361 Pfam CCT motif 292 334 IPR010402 GO:0005515
Gso13g0327 361 SMART bboxneu5 15 62 IPR000315 GO:0008270
Gso13g0327 361 SMART bboxneu5 63 105 IPR000315 GO:0008270
Gso13g0327 361 CDD Bbox1_BBX-like 19 62 - -
Gso13g0327 361 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Gso13g0327 361 CDD Bbox1_BBX-like 62 105 - -
Gso13g0327 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 16 361 - -
Gso13g0327 361 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0327 Gso-Chr13 14633759 14636001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0327 1 361 C2C2-CO-like Transcription Factor Family AT3G02380 53.846 1.59e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso13g0327 zf-B_box 4.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0327 - - gmx:100782635 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0327 13 14633759 14636001 Gso19g0341 19 5537313 5539642 GST
Gso13g0327 13 14633759 14636001 Gso18g2278 18 55665227 55667887 PCT
Gso13g0327 13 14633759 14636001 Gso8g2100 8 22701621 22704271 PCT
Gso18g2278 18 55665227 55667887 Gso13g0327 13 14633759 14636001 PCT
Gso8g2100 8 22701621 22704271 Gso13g0327 13 14633759 14636001 PCT