Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0300 ATGTTTCCTTACAGTTCCAACCCCTCCCCTTCCTTCCCTTCATCATCTTCTTCATACCCTCCTTTTCCTTTTCTCAACCTTGAGAATGCTTCTGCAAGCAACACTCTTCTTCATGATGCACTTTCTGTGCCTTACATACCAACTCATCATAACCCTTCAAGCATCCAAGAAGCACTGAACAATTTTCCAGTCACAGATCATAACTGTGGTGGTGGCGGTGGCAGTGGTTCTGCAATGACCAAACCTGACCCTAATGGTGGTGGTGCTCCTCAGTATGGCATTTCTTGTTTTCTCACAAAGAAGCCACCTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGCTTGAGGGACCGAAGGGTGAGGTTGTCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGAGCTTGCAAGGAGCAAGCACAGCAACAACAACAGTGATGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGATTGTGAAGATGGCTGTGAAGTGGTTTCTGAGATCAAGCACAAACAACAACAACTCATCACTTGTGATGCTGCTGCTACTACTCCACACAACCTACAACAAGGGTTGGATTCAGGTGATAACAAGTCACCAACAACATTGATGGCTGCAAAGGAGAGGATGAAGTTGAAGAGGACACAGAAGGAACCTGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATTATTATGTGCAATGTTAACACCAACAACACAGGAGGGAAGGTGCTACAAGACTTGAAGAAAAAGTGCCCTGCAATTGAAAACAACCACACTCAAATTATGCATCAATCAAGGTCATCACCTACTCATCACCCTCACCACCTTGTGGGAAATGAAACACCTAGAGATGACTTCAACGTTATTGAGGAATCAATTGTGATCAAGAGAAAGTTGAAACCATCTTTGATGTCCTCTTCTGATCATCATCATCATCATCACCAAAACCTTGTGATGCCTAAGGAACCACCAAGCTTCAACAACAACAACAGTGAGTACCACCCCTTCTCCAATTTGTCTCCGAATTGGGATGCTAATGGTTCCACTGGTCGCTCCAACTTCTGTGCCATAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCATCAATCCACGTTAA 1260 0.4468 MFPYSSNPSPSFPSSSSSYPPFPFLNLENASASNTLLHDALSVPYIPTHHNPSSIQEALNNFPVTDHNCGGGGGSGSAMTKPDPNGGGAPQYGISCFLTKKPPKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKHSNNNSDEGAKSFSSSSDCEDGCEVVSEIKHKQQQLITCDAAATTPHNLQQGLDSGDNKSPTTLMAAKERMKLKRTQKEPAKMKESREKARARARERTSNKIIMCNVNTNNTGGKVLQDLKKKCPAIENNHTQIMHQSRSSPTHHPHHLVGNETPRDDFNVIEESIVIKRKLKPSLMSSSDHHHHHHQNLVMPKEPPSFNNNNSEYHPFSNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECINPR* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0300 419 MobiDBLite consensus disorder prediction 163 183 - -
Gso13g0300 419 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 16 419 - -
Gso13g0300 419 MobiDBLite consensus disorder prediction 238 262 - -
Gso13g0300 419 MobiDBLite consensus disorder prediction 302 321 - -
Gso13g0300 419 Pfam TCP family transcription factor 104 268 IPR017887 -
Gso13g0300 419 ProSiteProfiles R domain profile. 250 267 IPR017888 -
Gso13g0300 419 MobiDBLite consensus disorder prediction 66 94 - -
Gso13g0300 419 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 419 IPR005333 GO:0003700
Gso13g0300 419 ProSiteProfiles TCP domain profile. 104 162 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0300 Gso-Chr13 14243317 14245822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0300 99 264 TCP Transcription Factor Family AT1G67260 41.566 2.90e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso13g0300 TCP 5.4e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0300 - - gmx:100801549 804.668