Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0283 ATGGGTCGTGCAAGAATCAGCTTGAAACATATCTCAAATGAGAGATCTCGCAAGAAAACTTTCATGGAGAGAAGGAAAGTACTTATAAAAAAAATCTCTGAATTTTCCACCTTGTGTGGAGTTGAAGCATGCTTGATTGTGTATGATGATGGGAATGGTGACATTGAACCAGTGACTTGTCCCAAAGACCCTGTATTGGCACACTCCATACTTCAAAACTATGAGTTTCAAAAGAATCAGAGACCTCCCAAGAAGTTTGGTATTCAGGACTTTGTTGAGGATAGGAAGAACATCATTGAAGCTGAGATTTCCAAAGTGCATAAAGAGATCACCAACATCAAGTATCCAACTTCGGATCCAAGTTTCATAAACATGGAAGAGGATCAATTGAGGGCCTTCATTGCTCTGGTGGATGCTAAGATTAGGACCTGTGATCATTCTTTGAAAAACATGCATCAAAGTGAAGCCAACTTCATGCAAAACATGGCTTGGGGAAGTGCTTCCTCCTCCCATCCTACTCCTATGGAGCCACTTAATAATAATGGGAGGGTGGATGTTACAAACTCAATAGATCAGGTTTATGAAGCTATGCAACAAGTTGATGCTCCCTTTAGTTACATTCCAGACATGGTTCAGAAAAGTTTTAATTGCTTGCAAAACATCTCTCAAAGCCAACCCATACTTGATGTTGAGGATGAGATGGTAGGTTTTAGTAATAGAGTTGATGTGTCACTGGATACAACTAATCAAATTGCTGACTTGTTGGACTGGTTTGATGGACCTATTATTGGTTGGTCTGATCTTGTGGATTGGACTAGTCAACCTGATGAATCTCAGAATGAGCAACAAGGTGGAGGAGATTTGGATGGATTTCAAACAGAATGCTATAATCTGAATTTCTGA 903 0.3976 MGRARISLKHISNERSRKKTFMERRKVLIKKISEFSTLCGVEACLIVYDDGNGDIEPVTCPKDPVLAHSILQNYEFQKNQRPPKKFGIQDFVEDRKNIIEAEISKVHKEITNIKYPTSDPSFINMEEDQLRAFIALVDAKIRTCDHSLKNMHQSEANFMQNMAWGSASSSHPTPMEPLNNNGRVDVTNSIDQVYEAMQQVDAPFSYIPDMVQKSFNCLQNISQSQPILDVEDEMVGFSNRVDVSLDTTNQIADLLDWFDGPIIGWSDLVDWTSQPDESQNEQQGGGDLDGFQTECYNLNF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0283 300 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Gso13g0283 300 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso13g0283 300 PANTHER MADS BOX PROTEIN 3 256 - -
Gso13g0283 300 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Gso13g0283 300 CDD MADS_SRF_like 2 49 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso13g0283 300 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso13g0283 300 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso13g0283 300 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso13g0283 300 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Gso13g0283 300 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Gso13g0283 300 PANTHER PROTEIN, PUTATIVE-RELATED 3 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0283 Gso-Chr13 13933044 13934851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0283 1 142 Type I MADS-box Gene Family AT5G55690 34.932 1.85e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso13g0283 SRF-TF 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0283 - - gmx:100777824 612.838