Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0256 ATGTATGCTTTCTCTCTAAACATGGTGCTGCATCACAGAAAGCTTTTATTGTTTCCACCACCACCACCACCACTCTGTAGAAGTGCCTGTCCTGAGAAATTTAATGACCCTCTACCCCCACCTAACTCCCCAGATGATTATTTGACCCAAAGTCCCACCAAAAACATCAAAATCTCCAAATACTTGATCATAAGTTTCTCCATTGTAGCAACCGCTTTCATTGTCCTCAGCTTCTACGCCATCTACGCCAAATTTTTCTCTCCTCGGAACAGGTCAATACGAAGAACACTATCACGCCCAGAAACAGAACAAGATTTCTTGGACGAGGAAGAACAACAACAACATGGTCCTGTCGTTGACCACCCCATCTGGTACATCCGCACCACCGGTCTCCAACAAGCAGTCATTACCGCCATCACCGTCTGCAAATACAGAAAAGATGAAGGCTTGATTGAAGGCACCGATTGTTCCGTTTGCCTGAGCGAGTTTCAAGAAGACGAAAGTCTCAGGCTTTTGCCAAAGTGTAACCACGCTTTTCATTTACCTTGCATTGACACGTGGCTCAGATCACACACCAATTGCCCCATGTGCCGTGCTCCCATCGTCACTGACCCCACAAGGGTTCCTTCCATGGACCCTACTGCGTTTGAAGCAAGTTCTTTTGTGGAGGAGGTTTTGGAAAATAGTGTGGAAGATGCTCAAAGCAGTAGTGATGATTTGGTGAGGAATGAGGAAGAGGAAAGAGTGCAAGAAGGTGAAGTGTGTGAAAATGAGAACTTGGCTGTGACTGTGCAGCCGAGAAGATCGGTGTCTTTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCAACTGTTGTGTCAGGGGATTCTCATGGGAATCATTCAAAGAGGGTTGTTGGGAATGTGAATGGGAATTTGTCAACTAAAGGTGGTTCTTCTTCTTCTTCTTCGTCTAGTTCGGTGAAGAGGTCACGATCATTCAATGCCAAACACTTGCTATCATGGTATAGCCGTAGTCAGAGAAAGCCAAATGCTCCTTTGAGAAGCTTCTGA 1059 0.457 MYAFSLNMVLHHRKLLLFPPPPPPLCRSACPEKFNDPLPPPNSPDDYLTQSPTKNIKISKYLIISFSIVATAFIVLSFYAIYAKFFSPRNRSIRRTLSRPETEQDFLDEEEQQQHGPVVDHPIWYIRTTGLQQAVITAITVCKYRKDEGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPTAFEASSFVEEVLENSVEDAQSSSDDLVRNEEEERVQEGEVCENENLAVTVQPRRSVSLDSSSAAKISLALATVVSGDSHGNHSKRVVGNVNGNLSTKGGSSSSSSSSSVKRSRSFNAKHLLSWYSRSQRKPNAPLRSF* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0256 352 MobiDBLite consensus disorder prediction 290 325 - -
Gso13g0256 352 CDD RING-H2_EL5_like 155 198 - -
Gso13g0256 352 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Gso13g0256 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 205 IPR013083 -
Gso13g0256 352 SMART ring_2 156 197 IPR001841 -
Gso13g0256 352 MobiDBLite consensus disorder prediction 232 253 - -
Gso13g0256 352 Pfam Ring finger domain 155 198 IPR001841 -
Gso13g0256 352 SUPERFAMILY RING/U-box 146 205 - -
Gso13g0256 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 340 IPR044675 -
Gso13g0256 352 PANTHER RING-H2 FINGER PROTEIN ATL54 26 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0256 Gso-Chr13 13529870 13531458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0256 63 202 C3H Transcription Factor Family AT1G72220 54.286 1.24e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0256 - - gmx:100801551 641.343