Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0253 ATGGAATGCAACAAAGATGAGGCTGCCAGGGCCAAAGAAATAGCAGAGAGGAAATTTACTGAAAGGGAATATGCTGGTGCAAAAAAGTTTGCTCTCAAGGCTCTAAATTTGTTTCCTGCACTGGAGGGTCTTTCCCAGTTGCTAACAACACTTGATGTTTATATCTGTGCCGAGAATAAAATACATGGAGAAATGGATTGGTATGGTATACTTGGAGTGTATCCATATGCTGATGAAGAGACGGTTAGGAAGCAGTACAGAAAGCTGGCTCTAAATCTTCACCCTGATAAAAACAAGTCTCCAGGTGCAGAAGGTGCATTCAAGCTTGTTTCAGAGGCATGGAGTTTACTATCAGATAAGGTCAAAAGACTAGCATATAACCAGAACAGGAGATTGGAAGGATTTCAGCATAATGCTCCCAACCATGTCGGGACTCAATCAAAAGCACCCAGTTCAAATGGTTATAAAAAACATAACAAGAATGCTACTTCAAGCATTAGAACTGGAAATAATGATGCTCGGGCACATCCACATCCACCCTCCATTCCTCCTCCACATACAAATGTTGGTACCTTTTGGACTATCTGTAATAAATGCAAGACACATTATGAGTATCTCAGGACATATTTGAATCAAACCCTTTTATGTCCCAATTGCAAACAAGCTTTTGTGGCTATAGAGAAGGGTCCCCCTCCCAACGTTTTTAAGTCATCTAGTTGGTCTTCTCGGCAACATCATCAGAAGTCTTCTCGGCAACATCCCAATGTTGGAAGGAATCACCCTGTGAATCCAGGAAGAACTGTTGCAGTTTCTCAAAATTTACAATCCAGCGGTCCTATAGGCATATCTTCTTTTGATAACACAAATTTCCAGTTTGGTCCTCACTCCAAAATGGCTGGCTTTGTTAAAAAAGATGGATCATCTTCTGTTTCTGCTGCAGATGTTAAGCAGCTGTCAAGTGAGACAAGAAGAGAATCAATTGCTGCATGGGAGAGGAGTCATTTGCATAAGAGGTCTGATGGTCCTTTTAGTAATGCCAAAAAACCTATGAAGAAAATAAGGACAGATGATATTTACATGTACAATACAAATCATATGACCATGAGAGATGGATCAAGCAGTTTGGGCAATTTTAATGAATCAGGAAAAGCTAACATGGGAACAGAAAGGATTCATGTTTTTTCAGGTACTCGTAAGCATTACAGCACAAAAGAGTTGTCGTTGTTTGAATTACGAAATATGTTGATTTATAAGGCTCAGACTGAAATTTTCAAGAAACTTCAAGAGTGGAGATCAATGGCTGAAGCTAAGATTACAAAAAAGGACAAAGGAAACAAGAGAAAGAAAAGCACATTCAATGACAAAACAACTGGTCCAGAGAAAGGTTCCACTATTAATGGTAACAGGCATGTGGACAGTGATTCTATCCCAGTCAAATCTGATGATACTGAAAAGGAAAAGGCAGCCTATGTTACAATCAACGTTCCAGATCCCGATTTTCACAATTTTGACTTGGACAGAACTGAAAATTCTTTTGCGGAGGACCAGGTCTGGGCAGCTTATGATGATGATGATGGAATGCCTCGCTATTATGCTAGAATTCACAAGGTGGTTTCCACAAAGCCATTTAGAATGCGAATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTAGGTTCTGGTTTTTACAAAACCTGTGGGGATTTCAGGACTGGCAAGCATGAAATAACTGAATCGTTAAATTCCTTTTCACACAAGGTAAGGTGGACAAAAGGCACCAGAGGAGTTGTTCGCATCTTTCCTAGGAAGGGGGAAGTCTGGGCTCTCTATAGAAACTGGTCTCCTGATTGGAATGAAAATACTCTAGATGAAGTGATACACAAGTATGATATGGTGGAAGTGCTTGAAGATTTCAATGAAGAGGAAGGTTTATTGGTCTCACCACTTGTTAAAGTTGATGCTTTTAGGACAGTGTTTCACAGGCACAGCCATGATCAGGGAAGAAAGATTCCTAAAGTGGAGATATTTCGATTCTCTCATCAGGTTCCTAATTACTTGCTTACCGGGCAAGAAGCTCATAATGCTCCAAAGGGCTGTCGAGAGTTGGATCCAGCAGCTACTCCTTTAGACCTTCAGACAACAACTGAAGAGGTGTTGAATAATGTCGGAAAATCGAAGGAAGACACGTTCCCCGGGTCACCTGAAAACCATGATGCTGGTAAAGGGAAGAATGCTTCTAAACATAATATAGAAGCTATATTAGACGAGGATGGTAAACAGGTTAAGTATGATAGATGA 2316 0.4054 MECNKDEAARAKEIAERKFTEREYAGAKKFALKALNLFPALEGLSQLLTTLDVYICAENKIHGEMDWYGILGVYPYADEETVRKQYRKLALNLHPDKNKSPGAEGAFKLVSEAWSLLSDKVKRLAYNQNRRLEGFQHNAPNHVGTQSKAPSSNGYKKHNKNATSSIRTGNNDARAHPHPPSIPPPHTNVGTFWTICNKCKTHYEYLRTYLNQTLLCPNCKQAFVAIEKGPPPNVFKSSSWSSRQHHQKSSRQHPNVGRNHPVNPGRTVAVSQNLQSSGPIGISSFDNTNFQFGPHSKMAGFVKKDGSSSVSAADVKQLSSETRRESIAAWERSHLHKRSDGPFSNAKKPMKKIRTDDIYMYNTNHMTMRDGSSSLGNFNESGKANMGTERIHVFSGTRKHYSTKELSLFELRNMLIYKAQTEIFKKLQEWRSMAEAKITKKDKGNKRKKSTFNDKTTGPEKGSTINGNRHVDSDSIPVKSDDTEKEKAAYVTINVPDPDFHNFDLDRTENSFAEDQVWAAYDDDDGMPRYYARIHKVVSTKPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEITESLNSFSHKVRWTKGTRGVVRIFPRKGEVWALYRNWSPDWNENTLDEVIHKYDMVEVLEDFNEEEGLLVSPLVKVDAFRTVFHRHSHDQGRKIPKVEIFRFSHQVPNYLLTGQEAHNAPKGCRELDPAATPLDLQTTTEEVLNNVGKSKEDTFPGSPENHDAGKGKNASKHNIEAILDEDGKQVKYDR* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0253 771 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Gso13g0253 771 PANTHER HEAT SHOCK PROTEIN-LIKE 1 733 - -
Gso13g0253 771 MobiDBLite consensus disorder prediction 456 473 - -
Gso13g0253 771 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Gso13g0253 771 MobiDBLite consensus disorder prediction 132 171 - -
Gso13g0253 771 Pfam DnaJ domain 66 127 IPR001623 -
Gso13g0253 771 Pfam Domain of unknown function (DUF3444) 492 697 IPR024593 -
Gso13g0253 771 MobiDBLite consensus disorder prediction 727 771 - -
Gso13g0253 771 MobiDBLite consensus disorder prediction 439 479 - -
Gso13g0253 771 CDD DnaJ 66 119 IPR001623 -
Gso13g0253 771 Gene3D DnaJ domain 63 174 IPR036869 -
Gso13g0253 771 PRINTS DnaJ domain signature 68 86 IPR001623 -
Gso13g0253 771 PRINTS DnaJ domain signature 86 101 IPR001623 -
Gso13g0253 771 PRINTS DnaJ domain signature 102 122 IPR001623 -
Gso13g0253 771 MobiDBLite consensus disorder prediction 439 455 - -
Gso13g0253 771 MobiDBLite consensus disorder prediction 234 266 - -
Gso13g0253 771 PANTHER BNAC03G44070D PROTEIN 1 733 - -
Gso13g0253 771 SUPERFAMILY Chaperone J-domain 59 126 IPR036869 -
Gso13g0253 771 SMART dnaj_3 65 122 IPR001623 -
Gso13g0253 771 MobiDBLite consensus disorder prediction 736 771 - -
Gso13g0253 771 MobiDBLite consensus disorder prediction 132 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0253 Gso-Chr13 13427264 13431619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0253 4 231 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.780 2.06e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0253 - - gmx:100792212 1560.04