Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0241 ATGGAACCACAAAACCGCAGCAATAGCATCCTATGCAAATACACTGAACACGAAACCGTTACAAAAAAACACATGAAATCAAAAAACAATACTTCTCTTTCGCCTAAAGTCATTTCCATATTGATGACGGATCAATATGCTACAGACTCATCCAGCGACGAAGAAAGAGTCACGAGCCGCCGGCGCATCAAGCGTTATGTCAATAGAATCGAGCTTCAGCCGGCGATTAAATCCGTCGCTACCAGAAAGAGACACGTTGGAGACGCCACGAAACTACGGCCGCCGCAGGTGAAGGTGAAGAATTCTGGCAGCGTGAAAAAATTCCGCGGTGTGAGGCAACGCCCATGGGGTAAATGGGCGGCGGAGATACGGGATCCTGTGCAGCGCGTGAGAATCTGGCTGGGAACCTTCGAAACCGCGGAGGAGGCCGCCTTGTGTTACGACAATGCCGCAATCATGCTCCGCGGCCCGGACGCCCTAACGAATTTCGGGATACGGTCAAAGGAAACGTTGGAGAAAGAAGAAAGAAAAGAGTTGGATGAAAAGGAAGAAATCAGAACCGAAAAACCGGAAATGAAGGTGGTCGTGAAACCGGAGATTGAAACTGCTTTGGTCTCCTGCTTCTACGACTCGGCGGACGAGTTTTGTCTGAACCTCTCGTCACCCACTTCAGTTCTCCGGTTCAACGAATCAGCTGAACTGGAGAAACAGTACGAGCCGTTTCCCGGTCGAACCGAAGCCCACACCGTGCTGGAAGAGTGTCAAGGACAAACTGTGTCGTTTCATGAAAGTAGTGAGTTTATGTTACAAGACATGCCGTGGGATGATGTGTTTAATTTTCCGGTAATGTTCGACGAGCCGGTGTCGCACTTGTTTGACGAAACGACGCGGTTTTCGAGTAGTGAGGTTTTCAGTGAGGAAAAGTTTTTGCCGTCAGCAACGTTGTGCCAAGTGGACGATTATTTCCAAGACATTTTGTTAGGGTCAGATCCTCTGGTGGCTCTGTGA 1008 0.4931 MEPQNRSNSILCKYTEHETVTKKHMKSKNNTSLSPKVISILMTDQYATDSSSDEERVTSRRRIKRYVNRIELQPAIKSVATRKRHVGDATKLRPPQVKVKNSGSVKKFRGVRQRPWGKWAAEIRDPVQRVRIWLGTFETAEEAALCYDNAAIMLRGPDALTNFGIRSKETLEKEERKELDEKEEIRTEKPEMKVVVKPEIETALVSCFYDSADEFCLNLSSPTSVLRFNESAELEKQYEPFPGRTEAHTVLEECQGQTVSFHESSEFMLQDMPWDDVFNFPVMFDEPVSHLFDETTRFSSSEVFSEEKFLPSATLCQVDDYFQDILLGSDPLVAL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0241 335 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Gso13g0241 335 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Gso13g0241 335 CDD AP2 106 163 IPR001471 GO:0003700|GO:0006355
Gso13g0241 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 10 325 - -
Gso13g0241 335 Coils Coil 168 188 - -
Gso13g0241 335 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 325 - -
Gso13g0241 335 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Gso13g0241 335 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Gso13g0241 335 SUPERFAMILY DNA-binding domain 107 165 IPR016177 GO:0003677
Gso13g0241 335 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Gso13g0241 335 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0241 Gso-Chr13 12833856 12835661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0241 12 228 AP2-EREBP Transcription Factor Family AT4G27950 45.887 5.32e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso13g0241 AP2 8.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0241 - - gmx:100801199 645.58