Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0238 ATGGAACCCCAGAAAAGTCTATTAATGGATGAAAGCTTATGTGATATTTTCAAAGACACAGAATTTGGGGACACACACTTTGGTGGAGGGGATCTCTTTTCCATTTTGGAGAGCATAGATGACTTGAAAGATTTTCCTCCCACCAACAACAATGAAGCTGTTATTGGCCGAACTTCAAAAGAAAATGAGCAAAATTCAAGAATGGTGTCCCAAAAGGTTTTAATATCTTCAAGTGCCCCACAAGATTCTGAAACTGAGCATGAAATCTCACCCAAAAGCAAGAGACAAAAGCTTCGTTCCACATCGCCAGAGGAACTACAGAAGGTGTCTCACATAACCGTGGAGCGCAACCGAAGAAAGCAAATGAATGAGAACCTGTTGGTCTTGAGGTCTCTTATGCCTTCCTTTTATGTCAAACGGGGAGACCAAGCATCAATAATTGGAGGCGTGGTTGATTACATCAACGAAATGCAGCAGCTGCTGCAGTGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACATTGAAGTCCTAAGCCCTAGGCTAGTTTCAAGCCCAAGGCCCTCACCACTGAGCCCTAGAAAACCACCCTTGAGCCCTAGAATAAGCCTCCCCATTAGTCCAAGGACTCCACAACAACCTAGTAGCCCTTACAAGCCCAGGTTGCAGCCAGGATACCTTTCCCCAACCATAGCCAACTCTCCTACTTCTTCAGCTTCTTCTTCCATCAATGATAATATTAATGAGCTTGTTGCTAATTCAAAGTCCATTATAGCTGATGTTGAGGTCAAGTTTTCAGGTCCACATGTGCTTCTGAAGACTGTGTCACCACCAATTCCTGGCCAGGCCATGAGAATAATATCAGCTCTTGAAGACCTAGCACTAGAAATCCTCCATGTGAACATTAGCACTGCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTCGCTCAACAAATCCAACAAACATTCTGCTAA 1011 0.4332 MEPQKSLLMDESLCDIFKDTEFGDTHFGGGDLFSILESIDDLKDFPPTNNNEAVIGRTSKENEQNSRMVSQKVLISSSAPQDSETEHEISPKSKRQKLRSTSPEELQKVSHITVERNRRKQMNENLLVLRSLMPSFYVKRGDQASIIGGVVDYINEMQQLLQCLEAKKQRKVYIEVLSPRLVSSPRPSPLSPRKPPLSPRISLPISPRTPQQPSSPYKPRLQPGYLSPTIANSPTSSASSSINDNINELVANSKSIIADVEVKFSGPHVLLKTVSPPIPGQAMRIISALEDLALEILHVNISTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0238 336 PANTHER TRANSCRIPTION FACTOR FAMA 9 336 IPR044283 GO:0003700|GO:0010052
Gso13g0238 336 MobiDBLite consensus disorder prediction 57 107 - -
Gso13g0238 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 173 IPR036638 GO:0046983
Gso13g0238 336 PANTHER - 9 336 - -
Gso13g0238 336 MobiDBLite consensus disorder prediction 182 239 - -
Gso13g0238 336 Pfam Helix-loop-helix DNA-binding domain 107 158 IPR011598 GO:0046983
Gso13g0238 336 MobiDBLite consensus disorder prediction 185 203 - -
Gso13g0238 336 Gene3D - 90 171 IPR036638 GO:0046983
Gso13g0238 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
Gso13g0238 336 MobiDBLite consensus disorder prediction 85 107 - -
Gso13g0238 336 MobiDBLite consensus disorder prediction 57 84 - -
Gso13g0238 336 SMART finulus 112 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0238 Gso-Chr13 12489148 12493095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0238 9 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.276 1.33e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso13g0238 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0238 K20558 - gmx:100809717 577.785