Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0232 ATGTCTAGCAATGCATTAACTCTTTTTATCTTGTTTCTCAACATCTCCTTGTTCCCAGCAGCCACCTCTTCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTCTCAACATTCAATTCATCTGATTCTGCTACTGCTTTTTCATCATGGGATCCAACCCACCACAGTCCATGCAGATGGGACTACATAAGGTGTTCCAAAGAAGGGTTTGTCTTAGAGATCATAATAGAATCCATTGATCTTCACACCACCTTCCCTACACAGCTTCTTTCTTTTGGCAACCTTACAACTCTAGTCATCTCAAATGCAAACCTCACCGGCAAGATTCCCGGTTCGGTGGGAAACTTGTCATCGTCACTGGTTACATTGGACCTCAGCTTCAATGCTTTATCAGGAACCATTCCATCTGAGATAGGGAACTTGTATAAACTTCAGTGGCTGTATTTGAATTCAAATTCCTTGCAAGGCGGAATTCCATCACAAATTGGAAACTGTTCAAGGCTGAGGCAGCTGGAACTGTTTGATAACCAGATCTCTGGCTTGATTCCTGGGGAAATAGGCCAGTTGAGGGATCTTGAAATACTTCGAGCCGGAGGGAACCCGGCGATTCATGGAGAAATTCCAATGCAGATATCAAACTGCAAGGCTCTAGTTTATCTAGGCCTTGCAGATACTGGGATATCAGGGGAGATTCCACCAACTATAGGAGAACTTAAAAGTCTCAAGACACTTCAAATCTACACTGCACACCTCACAGGTAACATTCCACCAGAGATTCAGAACTGTTCAGCCTTGGAGGAGTTGTTTCTCTATGAAAACCAGCTTTCTGGAAACATTCCTTCTGAATTGGGTTCCATGACAAGCCTCAGAAAGGTACTTCTGTGGCAGAATAATTTCACTGGAGCCATTCCAGAAAGTATGGGAAACTGTACAGGCCTTAGAGTCATAGATTTTTCTATGAATTCTTTGGTAGGTGAACTTCCTGTGACTCTCAGTAGCCTTATCTTATTGGAGGAGCTTCTTTTGTCTAATAACAACTTTTCTGGAGAGATACCTTCTTATATTGGCAACTTCACCAGCTTGAAGCAATTGGAATTGGATAATAACAGATTCTCTGGGGAGATTCCACCTTTCTTGGGGCATCTGAAGGAACTAACTTTGTTCTATGCCTGGCAGAATCAGCTCCATGGAAGCATACCAACAGAACTCTCCCACTGTGAGAAACTTCAAGCACTTGATCTTTCACATAATTTCCTCACTGGGTCCATTCCAAGTTCACTATTTCATCTAGAGAATTTAACTCAGTTGTTGTTGTTATCAAATAGACTTTCAGGTCCAATTCCTCCAGATATTGGCAGTTGCACCAGCTTGGTCAGGCTAAGGTTGGGATCAAACAACTTCACTGGCCAAATTCCACCAGAAATAGGCTTTTTAAGAAGTTTGAGCTTTCTTGAATTGTCAGATAATTCACTCACTGGAGATATACCCTTTGAGATAGGTAACTGTGCTAAGCTAGAGATGCTTGACTTGCACAGCAATAAGTTGCAAGGAGCAATTCCTTCCTCATTAGAATTCTTAGTTAGTCTTAATGTCTTGGATCTTTCTTTAAACAGAATAACTGGCAGCATTCCTGAAAATTTAGGCAAGCTAGCATCTCTAAATAAGTTGATACTCAGTGGAAACCAAATCTCTGGTTTGATCCCTAGGTCACTTGGCTTCTGTAAGGCTTTGCAGTTGCTGGACATAAGCAACAATAGGATCAGTGGTTCCATTCCTGATGAGATTGGTCACTTGCAAGAACTAGATATCCTGTTGAACTTGAGTTGGAATTATTTGACAGGCCCCATCCCAGAGACCTTCTCGAATCTCTCAAAACTTTCCAACTTGGACCTCTCTCACAACAAGCTCTCAGGGAGTCTCAAAATACTGGCTAGTCTTGACAATTTAGTTTCTCTTAATGTCTCCTACAACAGTTTTTCTGGTTCTCTTCCTGATACAAAATTCTTCAGGGATCTTCCTCCTGCTGCATTTGCTGGCAACCCTGACCTGTGTATTACCAAGTGTCCAGTAAGTGGACATCACCATGGCATCGAGTCAATAAGAAACATTATCATATACACTTTCCTTGGTGTTATTTTCACTTCAGGGTTTGTTACTTTTGGGGTAATCTTAGCTCTCAAAATCCAAGGGGGGACTAGTTTTGACAGTGAAATGCAATGGGCTTTCACTCCATTTCAAAAACTCAACTTCTCCATTAATGACATCATCCCAAAGTTGTCAGATTCAAACATTGTGGGAAAGGGTTGCTCGGGGGTCGTGTACCGTGTGGAGACTCCAATGAACCAGGTTGTTGCAGTGAAGAAGCTGTGGCCACCAAAGCATGATGAGACACCAGAGAGAGACCTTTTTGCTGCAGAAGTTCACACCCTTGGATCAATAAGGCATAAAAACATAGTGAGACTTTTAGGGTGCTACAACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGCAACGGGAGTTTGTCCGGATTGCTCCATGAAAATAGTGTGTTCTTGGATTGGAATGCAAGATATAAGATCATTCTGGGAGCAGCTCATGGATTAGAATATCTTCATCATGATTGTATTCCTCCAATCATTCATAGAGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTCTCTTGCAGATTTTGGCCTTGCAAAACTTGTTGCTTCGTCAGATTATTCTGGAGCTTCTGCAATAGTTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTGTACAGCTTTGGTGTGGTGCTCATTGAGGTCTTAACAGGGATGGAGCCAATTGACAACAGGATTCCAGAAGGGTCCCACATTGTCCCTTGGGTTATCAGGGAAATCAGAGAGAAGAAAACAGAATTTGCACCAATTCTGGACCAGAAACTAGCACTGCAATGTGGAACACAAATCCCTGAGATGCTTCAAGTGCTAGGGGTGGCTCTCCTCTGTGTGAATCAATCCCCAGAAGAAAGACCTACAATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGACATGAAAGTGTGGATTTTGATTTTGAGAAGTCAGATCTTCTACACAAAAGTGTTGTCACCAATCCAAAAGCTGCAGTTCAGTGTCCAAACTTCTCCAGATCTTGTAAACCTCTAACTGAATCACCATCTTCTTCAGTGTCACCACATTAA 3267 0.4203 MSSNALTLFILFLNISLFPAATSSLNQEGLSLLSWLSTFNSSDSATAFSSWDPTHHSPCRWDYIRCSKEGFVLEIIIESIDLHTTFPTQLLSFGNLTTLVISNANLTGKIPGSVGNLSSSLVTLDLSFNALSGTIPSEIGNLYKLQWLYLNSNSLQGGIPSQIGNCSRLRQLELFDNQISGLIPGEIGQLRDLEILRAGGNPAIHGEIPMQISNCKALVYLGLADTGISGEIPPTIGELKSLKTLQIYTAHLTGNIPPEIQNCSALEELFLYENQLSGNIPSELGSMTSLRKVLLWQNNFTGAIPESMGNCTGLRVIDFSMNSLVGELPVTLSSLILLEELLLSNNNFSGEIPSYIGNFTSLKQLELDNNRFSGEIPPFLGHLKELTLFYAWQNQLHGSIPTELSHCEKLQALDLSHNFLTGSIPSSLFHLENLTQLLLLSNRLSGPIPPDIGSCTSLVRLRLGSNNFTGQIPPEIGFLRSLSFLELSDNSLTGDIPFEIGNCAKLEMLDLHSNKLQGAIPSSLEFLVSLNVLDLSLNRITGSIPENLGKLASLNKLILSGNQISGLIPRSLGFCKALQLLDISNNRISGSIPDEIGHLQELDILLNLSWNYLTGPIPETFSNLSKLSNLDLSHNKLSGSLKILASLDNLVSLNVSYNSFSGSLPDTKFFRDLPPAAFAGNPDLCITKCPVSGHHHGIESIRNIIIYTFLGVIFTSGFVTFGVILALKIQGGTSFDSEMQWAFTPFQKLNFSINDIIPKLSDSNIVGKGCSGVVYRVETPMNQVVAVKKLWPPKHDETPERDLFAAEVHTLGSIRHKNIVRLLGCYNNGRTRLLLFDYICNGSLSGLLHENSVFLDWNARYKIILGAAHGLEYLHHDCIPPIIHRDIKANNILVGPQFEASLADFGLAKLVASSDYSGASAIVAGSYGYIAPEYGYSLRITEKSDVYSFGVVLIEVLTGMEPIDNRIPEGSHIVPWVIREIREKKTEFAPILDQKLALQCGTQIPEMLQVLGVALLCVNQSPEERPTMKDVTAMLKEIRHESVDFDFEKSDLLHKSVVTNPKAAVQCPNFSRSCKPLTESPSSSVSPH* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0232 1088 PRINTS Leucine-rich repeat signature 410 423 - -
Gso13g0232 1088 PRINTS Leucine-rich repeat signature 624 637 - -
Gso13g0232 1088 SUPERFAMILY Protein kinase-like (PK-like) 741 1035 IPR011009 -
Gso13g0232 1088 Gene3D Ribonuclease Inhibitor 30 141 IPR032675 -
Gso13g0232 1088 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1056 - -
Gso13g0232 1088 ProSiteProfiles Leucine-rich repeat profile. 409 431 IPR001611 GO:0005515
Gso13g0232 1088 SUPERFAMILY L domain-like 433 684 - -
Gso13g0232 1088 Gene3D Ribonuclease Inhibitor 142 231 IPR032675 -
Gso13g0232 1088 Pfam Leucine Rich Repeat 409 431 IPR001611 GO:0005515
Gso13g0232 1088 Pfam Leucine Rich Repeat 599 624 IPR001611 GO:0005515
Gso13g0232 1088 Pfam Protein tyrosine and serine/threonine kinase 764 1034 IPR001245 GO:0004672|GO:0006468
Gso13g0232 1088 ProSitePatterns Protein kinases ATP-binding region signature. 766 789 IPR017441 GO:0005524
Gso13g0232 1088 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Gso13g0232 1088 ProSiteProfiles Protein kinase domain profile. 760 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0232 1088 PANTHER LRR RECEPTOR-LIKE KINASE 3 1056 - -
Gso13g0232 1088 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Gso13g0232 1088 Pfam Leucine rich repeat 505 564 IPR001611 GO:0005515
Gso13g0232 1088 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515
Gso13g0232 1088 SUPERFAMILY RNI-like 212 517 - -
Gso13g0232 1088 Gene3D Transferase(Phosphotransferase) domain 1 839 1058 - -
Gso13g0232 1088 Gene3D Ribonuclease Inhibitor 232 407 IPR032675 -
Gso13g0232 1088 Gene3D Ribonuclease Inhibitor 408 694 IPR032675 -
Gso13g0232 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 882 894 IPR008271 GO:0004672|GO:0006468
Gso13g0232 1088 SMART serkin_6 760 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0232 1088 Gene3D Phosphorylase Kinase; domain 1 738 838 - -
Gso13g0232 1088 SMART LRR_typ_2 527 550 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 335 358 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 575 599 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 431 455 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 359 383 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 551 574 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 142 166 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 287 311 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 624 646 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 647 680 IPR003591 -
Gso13g0232 1088 SMART LRR_typ_2 479 503 IPR003591 -
Gso13g0232 1088 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515
Gso13g0232 1088 SUPERFAMILY L domain-like 29 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0232 Gso-Chr13 12206471 12210420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0232 24 1074 Receptor kinase-like Gene Family AT5G56040 47.393 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso13g0232 PK_Tyr_Ser-Thr 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0232 - - gmx:100812406 2106.64