Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0218 ATGCCTCAGCTGCAGAGGAGAAACACGCGTACTCGTTGGACCGAAGAGGAACACAGGTTATTTCTTATTGGGATGGAGAGATTTGGTAAAAGTAATTGGACAAACATTGCACAACATGTTGTGTTGACAAAAACTCCCTCCCAAGTTGCTAGCCACGCCCAAAAGTTTTTCCTCCACCATAGTAGTGTCAAACAAAGCAAAAGACAGAGGAAAATCCCCAGCATACACGACATAACCCTGGTCTCACAACCAGTTTCCCAACACAACCCAGTAAATGATCAATTAGCAGAGAAACTGCATGTGGTTCCCTCACAACAATTGACAGACTTTGAAGGTTGCTTGGCAATTCACCTCAATGACCAGCTGAGTAGGCCTCCCTCAACAATGGCACAAGATCTGCAAATTCAGCAATTGCCTCACTTCGTTGACCATGATAGCTGGGTTTCAACTCCAAATCAACAGGTTCCAAAATTACCCCACAATCTTCTTGACCAGGATAAGTGGATTCCTCCACTAGGTCTGCAAATTCACCAATTTTCTGACTTAATTGATGACCATATTGATTTGGCTCCTCTCCCTGATCTACTAGAGTTACCTCTCCCTTATCTACCCTTACCTCACCATCTTGACCAGGAGAAGTGGATTCCACCACAAGATCTGCAAACTCACCAACTGCCTCACTTCATGGATCATGATAACTGGGTTTCAACTCCAAATCAACAGTTTCCAGAATTACCCCACCATCTTCTTGACCAGGAGAACTGGACTCCTCCACTAGATCTGGAAATTCACCAATTTTCTGACTTCATTGATGATCCTCTTGATTTGGATCCTCTCCATGATCTGCTAGAATTACCTCTCCCTGATCTACTACTAAAATTGTCTCACCATCTTGACCAGGAGAAGTGGATTCCTCCACCAAATTCACCAATTTCCTGA 939 0.4388 MPQLQRRNTRTRWTEEEHRLFLIGMERFGKSNWTNIAQHVVLTKTPSQVASHAQKFFLHHSSVKQSKRQRKIPSIHDITLVSQPVSQHNPVNDQLAEKLHVVPSQQLTDFEGCLAIHLNDQLSRPPSTMAQDLQIQQLPHFVDHDSWVSTPNQQVPKLPHNLLDQDKWIPPLGLQIHQFSDLIDDHIDLAPLPDLLELPLPYLPLPHHLDQEKWIPPQDLQTHQLPHFMDHDNWVSTPNQQFPELPHHLLDQENWTPPLDLEIHQFSDFIDDPLDLDPLHDLLELPLPDLLLKLSHHLDQEKWIPPPNSPIS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0218 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Gso13g0218 312 Gene3D - 11 63 - -
Gso13g0218 312 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 4 185 - -
Gso13g0218 312 SMART sant 9 59 IPR001005 -
Gso13g0218 312 ProSiteProfiles SANT domain profile. 8 61 IPR017884 -
Gso13g0218 312 CDD SANT 12 57 IPR001005 -
Gso13g0218 312 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gso13g0218 312 SUPERFAMILY Homeodomain-like 6 62 IPR009057 -
Gso13g0218 312 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 185 - -
Gso13g0218 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 8 59 IPR006447 GO:0003677
Gso13g0218 312 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0218 Gso-Chr13 11796275 11798718 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso13g0218 Myb_DNA-binding 4.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0218 - - gmx:102664863 577.015