Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0200 ATGTTGAATATGTTGGCATTAGCCCTCGTAGTAGTAATAATAACCGTAGCTGTTGTACCTCATCAAACCCTTTCCGCCACAACACCAAAACAAGCCCTCCCTGGCTGCAAATCCACCTGTGGAAATGTCCAAATTCCTTATCCATTCGGCATAGGTAACTCTTCAACACCCGGTCACCGACCCTGTTTCTTGGATCGCAAATTCAAGCTTACTTGTGATGGCTCCATATTATATTATGGTAATGTAAGAGTTTCAAACATCAGCTTCCTAAGTCATCAAATAGACCTATTGGCCTCTTTCGCATCGCTTTGCCACCAGCAAAACGGAAGCGAACTCCCCAAGTCCTACCATCTTCGCACTGGCAGTTTCAGCATTTCAAGCAACGAAAACAAGTTACTAACCGTTGGCAGCGATAGCTATGGCTACGTAAATAGTTATTTCAACGGGGAGTCATATTCAACTGGGTGCTTAACGAGCTCTCATGGCAACACAAAGAGGATCAAAAACGGAACGTGCTCGGGCATAGGGTGTTGCCAGGTGGATATTCCTCCTGGAATGAGGAACATCACTCTGCGGGCAAGAGTTTTCCACAATTCAACGCTAGATTGGGGAAACTGCAGCTATTCATTTGTAGTCAAAAATGGCTTTTATAATTTTTCTACTACTGACATACAAAGCTTCCCACACAAGAAGATCCCATTGGTTCTGGATTGGACCGTGGGAAACAAAAGCTGTGATGATTCCAATAGTAAAGGCAATGAGGCCTGCAAGTGGAATAGCTATTGCGACGACAAGGACACTGATTTTGGTTATCGATGCAGATGTAAAGATGGCTATGAAGGAAACCCATATCTTGGCTGTACAGACATTGACGAATGTAAGACAGACAATCATACATGCATAAGTGAACAAAATTGTGTCAACACCATTGGATCCCATACATGTTTCTGTCCAAAGGGGCTTTCCGGAAATGGAACAAAGGAAGAAGGGTGCCACAAACGAGATGTAGTTCCGAAGGTTGTCATAGGAGTAGGAGCAGCAATTGTTATTCTGTTTGTGGGCACTACCTCATTGTACTTGATATACCAGAAAAGGAAACTCGTCAAACTTAGAGAGAAATACTTTCAGCAGAATGGTGGTTCCATTTTGCTACAGCAACTCTCTACAAGTGAAAACTCCTCCCGAATTACTCAAATTTTCACAGAAGAAGAACTAAAGAAAGCAACCAACAACTTCGACGAGAGCTTAATCATTGGTAGTGGAGGTTTTGGAACTGTTTTCAAAGGATATCTTGCAGATAACAGAGTTGTTGCTGTCAAAAAGTCCAAAATAGTTGATGAAAGCCAAAAGGAACAATTCATTAACGAGGTGATTGTTCTATCCCAAATCAATCATAGGAATGTGGTCAAACTCTTGGGATGCTGTTTAGAGAGAGAAGTTCCTTTACTGGTTTATGAATTTGTTAATAATGGTACCCTTTATGATTTTATACACACTGAAAGAAAGGTAAATAATGAAACTTGGAAAACCCATCTGAGGATAGCAGCAGAGTCAGCTGGAGCACTATCATATCTTCACTCAGCAGCCTCAATACCAATTATCCACAGAGATGTCAAGACTGCTAACATACTCTTGGATAACACTTATACTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTACCAATTGATCAAACAGAAATAGCCACAATGGTGCAAGGAACTTTTGGTTACCTGGATCCAGAGTACATGCGTACAAGCCAACTAACTGAGAAAAGTGATGTCTATAGCTTTGGGGTAGTGCTTGTAGAGTTGCTAACGGGGGAGAAACCTTATTCTTTTGGCAAACCAGAGGAGAAAAGAAGTCTTACTAACCACTTTTTGTCTTGCTTGAAAGAGGATCGCCTGTTTGATATTGTTCAAATTGGCATTGTGAATGAAGAAAATAAAAAGGAGATCATGGAGGTTGCTATTCTTGCTGCAAAGTGCTTGAGACTCAACGGGGAGGAAAGGCCTAGCATGAAGGAAGTGGCAATGGAGTTGGAGGGAATAAGGATAATGGAGAAGCATCCCTGGATTAATACAGACCAAAATGTTGAGGAGACTCAACACCTTCTTCACGAGGCATCATCTAGCATTTATGAGCTTGGTGATAGCAGCAGCCATCAATATGCTGGGTATGATAGCATTAGGGATCATGTACTGATTGCTTTGGATGATGGAAGAGCAGCCCAAGTTGTGAGTGATAAAATTGAGTCCAAGAAAACAATGGGATTGAATGTCCCGCAGAGGCAACTAACCCTTCTGTTGCTGATTGCGTTAGCAGCAGCTGAAAAAACCCTACATGGCTGCCGAAGCACTTGCGGAAGCGTTTCATCAATTCCGTATCCATTTGGCATAGGCAACTCTTCTGTCACCGGTGAAAACTGTTTCTTGGAGAGGGCATTGATGCTCACTTGCATAAACTCCACTTTATATCTCGGAAACGGTAACGTCCAAATTCTGGACATAACCCTCGACAGTAAAATGGTCGTGCTTGCCTTCATCTCGAAAGTTTGCAAAATCGAATCTTTTGGTAGAGTAGACACGAAAGGTAACGAAGCCAGTCTCACAACTCCGGCTTTTACCGTCTCTAGCGAGGACAACAAGTTCGTAACCGTAGGGTGCGATACCTATGGCTATCTCAACAGCTTTAACAACGACATCAGGTCTCGAATGGGGTGCTTCACAAGGTGTGACACCATAGAGAGTGTGCAAAGCATGCAGGAAGATGGAAAGTGTACGGGGATAGGGTGTTGCCAGATGGATATACCTCCTCGAATGAAGAATATTAGCATACAAGCATTCAGCTATTACAATTTCAATTACTCTTCGGACTTCAACAAATGCGGCTATTCTTTTGTGGCAAAAAACGGCAACTATACTTTCTCGATGAAACATTTAAAATCGGTACCATTCGATAAGGCTCCCATGGTTGTTGATTGGGCAGTTGGAAAACAGTGTTTCAATTCCAAGGGTAAAGCATGCAAGAGTAATAGCGTTTGTGAGAACTCGCCCTCGGGATATGGCTACCGATGCAAATGTAAAAAAGGCTTTGAGGGAAACCCGTACCATCCGGATGGTTGCAAAGACATTGACGAATGTAAGACAGGCAGTCATACATGCATAAGTGAAAAAAATTGTCTCAACACCAACGGATCCCACATATGTTTGTGTCCAAAATCAGGAAATGGAACAAAGGGATCAGAAGGGTGCCACCAACAAGAAGTTGTTACCAAGGTTGTCATAGGAGTAGGAGCGGGAATTGTTATTCTATTTGTGGGGACGACCTCATTGTACTTGATATACCAGAAAAAGAAACTCAACAAACTCAGAGAGAAATACTTTCAGCAGAATGGTGGTTCCATTTTGCTACAGAAACTCTCTACAAGAGAAAACTCCTCCCAAATTCAAATTTTCACAGTGGAACAACTAAATAAGGCCACCGACAACTTTGACGAGAGCTTAATCATTGGCAAAGGAGGTTTTGGCACAGTTTTCAAAGGACACCTAGCAGATAACAGAATTGTTGCTATCAAGAAGTCCAAAATAGTTGATAAGAGCCAAAGCGAACAATTTGCTAACGAGGTGATTGTTCTATCCCAAATCAATCATAGAAATGTGGTCAAACTCTTGGGATGTTGTTTAGAGACAGAAGTTCCTTTACTGGTTTATGAATTTGTTAACAATGGTACCCTTTTTGATTTTATACACACCGAAAGAAAGGTAAATAATGAAACTTGGAAAACGCGTGTAAGGATAGCAGCAGAGGCAGCTGGAGCTCTAACATATCTGCACTCAGAAGCCTCAATAGCCATTATCCACAGAGATGTGAAGACTGCTAACATCCTCTTAGATAACACTTACACTGCAAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTACCAATTGATCAAGCAGAAATAGCCACAATGGTGCAAGGAACTTTTGGTTACCTGGATCCAGAGTACATGCGTACAAGCCAACTAACTGAGAAAAGTGATGTCTACAGCTTTGGGGTAGTGCTTGTAGAGCTGCTAACAGGGGAGAAACCATATTCTTTTGGCAAGCCAGAAGAGAAAAGAAGTCTCACTAACCACTTTTTGTCTTGCTTGAAAGAGGATCGCCTATCTGATGTTGTTCAAGATGGCATTATGAATGAAGAAAATAAAAAGGAGATCATGGAGGTTGCTATTCTTGCTGCAAAGTGCTTGAGACTCAATGGGGAGGAAAGGCCTAGCATGAAGGAAGTGGCTATGGAGTTGGAGCGAATGAGGCTAACCGAGAAGCATCCTTGGATAAATACATTCCAAAATCCAGAGGAGGCTCAGTTGCTTCAAAAGGGATCATCTAGCCTGTGTGTATCAGGTGATAGCGGCAGCCATCAATACACTGGGTATGACAGCATTAATGATCATGCACAAATTGCTTTCGATGATGGAAGATAA 4491 0.4208 MLNMLALALVVVIITVAVVPHQTLSATTPKQALPGCKSTCGNVQIPYPFGIGNSSTPGHRPCFLDRKFKLTCDGSILYYGNVRVSNISFLSHQIDLLASFASLCHQQNGSELPKSYHLRTGSFSISSNENKLLTVGSDSYGYVNSYFNGESYSTGCLTSSHGNTKRIKNGTCSGIGCCQVDIPPGMRNITLRARVFHNSTLDWGNCSYSFVVKNGFYNFSTTDIQSFPHKKIPLVLDWTVGNKSCDDSNSKGNEACKWNSYCDDKDTDFGYRCRCKDGYEGNPYLGCTDIDECKTDNHTCISEQNCVNTIGSHTCFCPKGLSGNGTKEEGCHKRDVVPKVVIGVGAAIVILFVGTTSLYLIYQKRKLVKLREKYFQQNGGSILLQQLSTSENSSRITQIFTEEELKKATNNFDESLIIGSGGFGTVFKGYLADNRVVAVKKSKIVDESQKEQFINEVIVLSQINHRNVVKLLGCCLEREVPLLVYEFVNNGTLYDFIHTERKVNNETWKTHLRIAAESAGALSYLHSAASIPIIHRDVKTANILLDNTYTAKVSDFGASRLVPIDQTEIATMVQGTFGYLDPEYMRTSQLTEKSDVYSFGVVLVELLTGEKPYSFGKPEEKRSLTNHFLSCLKEDRLFDIVQIGIVNEENKKEIMEVAILAAKCLRLNGEERPSMKEVAMELEGIRIMEKHPWINTDQNVEETQHLLHEASSSIYELGDSSSHQYAGYDSIRDHVLIALDDGRAAQVVSDKIESKKTMGLNVPQRQLTLLLLIALAAAEKTLHGCRSTCGSVSSIPYPFGIGNSSVTGENCFLERALMLTCINSTLYLGNGNVQILDITLDSKMVVLAFISKVCKIESFGRVDTKGNEASLTTPAFTVSSEDNKFVTVGCDTYGYLNSFNNDIRSRMGCFTRCDTIESVQSMQEDGKCTGIGCCQMDIPPRMKNISIQAFSYYNFNYSSDFNKCGYSFVAKNGNYTFSMKHLKSVPFDKAPMVVDWAVGKQCFNSKGKACKSNSVCENSPSGYGYRCKCKKGFEGNPYHPDGCKDIDECKTGSHTCISEKNCLNTNGSHICLCPKSGNGTKGSEGCHQQEVVTKVVIGVGAGIVILFVGTTSLYLIYQKKKLNKLREKYFQQNGGSILLQKLSTRENSSQIQIFTVEQLNKATDNFDESLIIGKGGFGTVFKGHLADNRIVAIKKSKIVDKSQSEQFANEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLFDFIHTERKVNNETWKTRVRIAAEAAGALTYLHSEASIAIIHRDVKTANILLDNTYTAKVSDFGASRLVPIDQAEIATMVQGTFGYLDPEYMRTSQLTEKSDVYSFGVVLVELLTGEKPYSFGKPEEKRSLTNHFLSCLKEDRLSDVVQDGIMNEENKKEIMEVAILAAKCLRLNGEERPSMKEVAMELERMRLTEKHPWINTFQNPEEAQLLQKGSSSLCVSGDSGSHQYTGYDSINDHAQIAFDDGR* 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0200 1496 ProSiteProfiles EGF-like domain profile. 1045 1087 IPR000742 -
Gso13g0200 1496 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Gso13g0200 1496 SUPERFAMILY Protein kinase-like (PK-like) 390 683 IPR011009 -
Gso13g0200 1496 Gene3D Transferase(Phosphotransferase) domain 1 1242 1457 - -
Gso13g0200 1496 Gene3D Transferase(Phosphotransferase) domain 1 488 709 - -
Gso13g0200 1496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1287 1299 IPR008271 GO:0004672|GO:0006468
Gso13g0200 1496 SUPERFAMILY Protein kinase-like (PK-like) 1146 1437 IPR011009 -
Gso13g0200 1496 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 756 1460 - -
Gso13g0200 1496 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 25 712 - -
Gso13g0200 1496 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 712 IPR045274 GO:0007166
Gso13g0200 1496 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 756 1460 IPR045274 GO:0007166
Gso13g0200 1496 Pfam Wall-associated receptor kinase galacturonan-binding 785 847 IPR025287 GO:0030247
Gso13g0200 1496 Pfam Wall-associated receptor kinase galacturonan-binding 36 95 IPR025287 GO:0030247
Gso13g0200 1496 Pfam Protein kinase domain 416 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0200 1496 Pfam Protein kinase domain 1170 1432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0200 1496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Gso13g0200 1496 SMART egfca_6 289 332 IPR001881 GO:0005509
Gso13g0200 1496 SMART egfca_6 1045 1087 IPR001881 GO:0005509
Gso13g0200 1496 ProSiteProfiles EGF-like domain profile. 998 1044 IPR000742 -
Gso13g0200 1496 ProSitePatterns Protein kinases ATP-binding region signature. 1172 1195 IPR017441 GO:0005524
Gso13g0200 1496 Gene3D Phosphorylase Kinase; domain 1 378 487 - -
Gso13g0200 1496 Gene3D Phosphorylase Kinase; domain 1 1139 1241 - -
Gso13g0200 1496 ProSiteProfiles EGF-like domain profile. 289 332 IPR000742 -
Gso13g0200 1496 CDD STKc_IRAK 418 685 - -
Gso13g0200 1496 SMART serkin_6 1166 1448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0200 1496 SMART serkin_6 412 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0200 1496 ProSiteProfiles Protein kinase domain profile. 412 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0200 1496 SMART egf_5 244 288 IPR000742 -
Gso13g0200 1496 SMART egf_5 1001 1044 IPR000742 -
Gso13g0200 1496 SMART egf_5 292 332 IPR000742 -
Gso13g0200 1496 SMART egf_5 1048 1087 IPR000742 -
Gso13g0200 1496 SUPERFAMILY EGF/Laminin 1045 1080 - -
Gso13g0200 1496 ProSiteProfiles Protein kinase domain profile. 1166 1448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0200 1496 ProSitePatterns EGF-like domain signature 2. 273 287 IPR000742 -
Gso13g0200 1496 Gene3D Laminin 1049 1086 - -
Gso13g0200 1496 Gene3D Laminin 243 331 - -
Gso13g0200 1496 CDD STKc_IRAK 1172 1439 - -
Gso13g0200 1496 SUPERFAMILY EGF/Laminin 287 324 - -
Gso13g0200 1496 Gene3D Laminin 1000 1048 - -
Gso13g0200 1496 Pfam Calcium-binding EGF domain 289 331 IPR001881 GO:0005509
Gso13g0200 1496 Pfam Calcium-binding EGF domain 1045 1076 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0200 Gso-Chr13 11120061 11136299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0200 13 743 Receptor kinase-like Gene Family AT1G21230 44.593 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gso13g0200 Pkinase 7.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0200 - - gsj:114381577 2976.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1246 14 30297952 30303279 Gso13g0200 13 11120061 11136299 GST