Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0198 ATGGAATACTGCTTGCAATTGTGTCGGGTGTTAATGTTTGCATTAGCCCTGGCCATGGTAGTTGCTGTTGCACCTGATCGAACCCTTTCTGAAGTCACACCTTCTTCACTGAACCAAGCAGCCCTTTCTGGCTGCAAATCCTCTTGTGGAGATGTCGAAATTTCATATCCATTCGGTATAGGATACTCATCTTTACCAGATCACAAGCCCTGTTTCTTGCAGTCAAAGTTTGAACTTACTTGCAACGACAGCTCCAAAAAATTACTTTGGGCTAACTTGGAAGTTTCAAATATAAATGTCACAAGTCATCAGATGGTGGTATCCTTTTTCGTCTCAGAGTTTTGCAGTAAAGAAAAAGCCTTTAATAAGCCCTGGATTAAAACAGGCAGGTTCAGCATTTCAAGAAAGGAAAACAAGTTCCTCACTGTAGGCTGCGATAGTTATGGCTATCTCAATAGTTACTTCGATGGGGATTTGTATTCAACAGGGTGCTTAACGAGATGTTATGGCAATAACAACTTGATTGATAATGAAACTTGTTGGGGTATAGGGTGTTGCCAGGTAGATATTCCTCCTCTAATGAGGAATATCACTGTAGAAGCATCTTCTTTCGTCCAATCAGGGACGGATAGTAGTGGTGTAAATGCCTCATCAACTACCTTCTTCAATTCAACATGCAGTTATTCCTTTGTTGTCAGAAATGGGTTTTATAAATTTTCTACTACTCATTTACAAAGTTTCCCAAACAAGACGCTCCCCATGGTTATTGATTGGACTGCGGGAGACAAAAGCTGTAAGGATTCCATGGGTAGAGGCGACTACGCGTGCAAGGCGAATAGCTATTGCGACGACGGCGACACTGATTATGGTTACCGATGCAGATGTAAAGATGGCTATGAAGGAAATTCATATCTTGGCTGCACAGAAATTTTGGAATGTACGACCAGGAGACACAATTGTTCAAGGGAAGATTATTGTCGCGAAGTCCGTGGGTCTTTCGAATGTTTCTGCCCCGATGGACTAATCGGAAATGGAACAATAGAAGGTGGAGGATGCCAACCAAAGCAGCGATATAATGTATTTACCAAGGTTGCCATTGGTGTAGGTGTAGGATTACTTGGTCTATTTATGGGGACTTCTTGGCTATACTTGATATACCAGAAAAGGAAAGTCCTCAAATTAAAGGAGAAGTTCTTTCAGCAAAATGGTGGTATGATTCTAAAACAGCAACTCTCAGCAAGAGAAGACTCGACGCAGTCCGCCACAATTTTCACTGCAGAGCAACTTAAGAAAGCCACCAACAATTTTGATGAGAGTTTAATCATCGGTAAAGGGGGTTATGGTACAGTTTTCAAAGGAGTTCTCTCAAATAACACTATTGTTGCTATCAAAAAGTCCAAAACTGTGGATCAGAGCCAGGTGGAGCAATTCATTAATGAGGTCATTGTACTATCACAAATTAATCACAGGAATGTGGTCAAGCTCCTGGGTTGTTGTTTAGAGACGGAAGTTCCTTTACTGGTTTATGAATTTGTTAGCAACGGTACCCTTTTTCATTATTTGCATAATGAAGGCCAATTAGCCAATGTGTGTTGGAAAACACGTCTAAGGATAGCAACAGAGGCAGCTGGAGCTCTGTCATATCTACACTCAGAGGCCTCCATACCCATCATCCATAGAGATGTCAAGACTGCTAACATCCTCTTGGATGATGCTTGCACTGCCAAAGTTTCTGATTTTGGTGCTTCAAGATTGATTCCACTTGATCAAACTGAATTAGCCACAATAGTGCAAGGAACCATCGGGTATTTAGACCCAGAGTACATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTTTATAGCTTTGGGGTGGTGCTTGTGGAACTGCTAACAGGGGAGAAACCTTTCTCTTTTGACAAGCCAGAAGATAAACGAAGTCTTACAGTTCACTTTCTATGTTGCTTGAAAGAGGATCGCTTGTTTGATGTTCTTCAAATTGGTATTTATGATGAAGAAAATAAACAGGAGATCATGGAAGTTGCTATTCTTGCGGCCAAGTGCTTGAGACTTAGAGGGGAGGAAAGGCCTGGTATGAAGGAAGTGGCAATGGAGTTGGAAGGAATACGACTAATGGAGAAACAACCAAGGACCAATGCAGGCCAAAATTTTGAGGAGACTCAGTACTTGCTTCATGGGGCATATAGCACTCATGAAAATGGTGATAGTAGTGGCCAACAAAATACTGGATATGACAGCTTGAGAGATATTGAATTAATTGACTTCGGTGATGGAAGATGA 2301 0.4142 MEYCLQLCRVLMFALALAMVVAVAPDRTLSEVTPSSLNQAALSGCKSSCGDVEISYPFGIGYSSLPDHKPCFLQSKFELTCNDSSKKLLWANLEVSNINVTSHQMVVSFFVSEFCSKEKAFNKPWIKTGRFSISRKENKFLTVGCDSYGYLNSYFDGDLYSTGCLTRCYGNNNLIDNETCWGIGCCQVDIPPLMRNITVEASSFVQSGTDSSGVNASSTTFFNSTCSYSFVVRNGFYKFSTTHLQSFPNKTLPMVIDWTAGDKSCKDSMGRGDYACKANSYCDDGDTDYGYRCRCKDGYEGNSYLGCTEILECTTRRHNCSREDYCREVRGSFECFCPDGLIGNGTIEGGGCQPKQRYNVFTKVAIGVGVGLLGLFMGTSWLYLIYQKRKVLKLKEKFFQQNGGMILKQQLSAREDSTQSATIFTAEQLKKATNNFDESLIIGKGGYGTVFKGVLSNNTIVAIKKSKTVDQSQVEQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLFHYLHNEGQLANVCWKTRLRIATEAAGALSYLHSEASIPIIHRDVKTANILLDDACTAKVSDFGASRLIPLDQTELATIVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPFSFDKPEDKRSLTVHFLCCLKEDRLFDVLQIGIYDEENKQEIMEVAILAAKCLRLRGEERPGMKEVAMELEGIRLMEKQPRTNAGQNFEETQYLLHGAYSTHENGDSSGQQNTGYDSLRDIELIDFGDGR* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0198 766 ProSiteProfiles Protein kinase domain profile. 436 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0198 766 Gene3D Phosphorylase Kinase; domain 1 401 511 - -
Gso13g0198 766 ProSitePatterns Protein kinases ATP-binding region signature. 442 465 IPR017441 GO:0005524
Gso13g0198 766 Gene3D Transferase(Phosphotransferase) domain 1 512 731 - -
Gso13g0198 766 ProSitePatterns EGF-like domain signature 2. 293 307 IPR000742 -
Gso13g0198 766 CDD STKc_IRAK 442 709 - -
Gso13g0198 766 SUPERFAMILY Protein kinase-like (PK-like) 417 707 IPR011009 -
Gso13g0198 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672|GO:0006468
Gso13g0198 766 Gene3D Laminin 263 348 - -
Gso13g0198 766 SMART egf_5 312 353 IPR000742 -
Gso13g0198 766 SMART egf_5 264 308 IPR000742 -
Gso13g0198 766 SUPERFAMILY EGF/Laminin 312 346 - -
Gso13g0198 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 38 736 - -
Gso13g0198 766 Pfam Wall-associated receptor kinase galacturonan-binding 45 107 IPR025287 GO:0030247
Gso13g0198 766 Pfam Protein kinase domain 440 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0198 766 SMART serkin_6 436 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0198 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 38 736 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0198 Gso-Chr13 11059025 11063459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0198 45 766 Receptor kinase-like Gene Family AT1G21230 45.714 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gso13g0198 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0198 - - gmx:100785674 1536.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1245 14 30278969 30291786 Gso13g0198 13 11059025 11063459 GST
Gso13g0198 13 11059025 11063459 Gso4g2043 4 50811892 50824666 PCT
Gso13g0198 13 11059025 11063459 Gso6g1008 6 9781614 9792584 PCT
Gso4g2043 4 50811892 50824666 Gso13g0198 13 11059025 11063459 PCT
Gso6g1008 6 9781614 9792584 Gso13g0198 13 11059025 11063459 PCT